PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 129aa MW: 14387.2 Da PI: 5.3432

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000088.1_g00024.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.3e-19	13	63	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g++ +eIrd + ng r++lg+++taeeAa+a+++a+ ++g Itr_sc000088.1_g00024.1 13 KYRGVRKRP-WGKYGVEIRDS-NrNG--VRVWLGTYDTAEEAARAYDRAAYGMRG 63 8******.******4.4254..********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.9E-13	13	63	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.853	13	71	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-29	13	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-22	13	72	IPR016177	DNA-binding domain
CDD	cd00018	5.94E-18	13	71	No hit	No description
SMART	SM00380	2.4E-31	13	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.9E-12	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.9E-12	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEEARRKNSE EVKYRGVRKR PWGKYGVEIR DSNRNGVRVW LGTYDTAEEA ARAYDRAAYG 60 MRGKFAVLNF PGEYPTTLNG SCSPATTMPP FGGSSLPPGM GFVERETAAK EVIEFECLDD 120 KLLEELLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-30	9	74	10	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165192.1	2e-53	PREDICTED: ethylene-responsive transcription factor ERF095-like
Swissprot	Q9LTC5	3e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A059D1V2	1e-41	A0A059D1V2_EUCGR; Uncharacterized protein
STRING	XP_010039174.1	2e-42	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	5e-23	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]