PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 159aa MW: 17099.8 Da PI: 4.8268

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000088.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	69.9	4.4e-22	20	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ ng +r++lg++gtaeeAa+a+++a+ +++g Itr_sc000088.1_g00022.1 20 KYRGVRRRP-WGKYAAEIRDPNRNG--ARVWLGTYGTAEEAARAYDRAAHQMRG 70 8******.******96665..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.289	20	78	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-16	20	70	IPR001471	AP2/ERF domain
CDD	cd00018	2.83E-29	20	80	No hit	No description
SMART	SM00380	1.9E-35	20	84	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-24	20	79	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.3E-31	20	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDEDRGGGGD GKKEGEAEVK YRGVRRRPWG KYAAEIRDPN RNGARVWLGT YGTAEEAARA 60 YDRAAHQMRG KFAVLNFPED YPSPQVVTSA SPSDPISHVA SASPSTASSS GGAAVENVGK 120 GSVEEGGETT KEVIEFECLD DKLLEDLLGC HDTEEPKKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-29	4	81	2	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162229.1	8e-57	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	7e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2J6KGH7	5e-42	A0A2J6KGH7_LACSA; Uncharacterized protein
STRING	XP_009780511.1	4e-41	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-22	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]