PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000084.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 423aa    MW: 45039.6 Da    PI: 8.4053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000084.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20210259255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Itr_sc000084.1_g00032.1 210 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 259
                              7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14210259IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22210268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-33210268IPR001471AP2/ERF domain
SMARTSM003808.5E-37210273IPR001471AP2/ERF domain
PROSITE profilePS5103225.712210267IPR001471AP2/ERF domain
PRINTSPR003671.2E-11211222IPR001471AP2/ERF domain
CDDcd000182.17E-14218269No hitNo description
PRINTSPR003671.2E-11233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MCLSIKVANR RDSGEYARFP ATGSGEESAS ASASASEGAS ESFDEMIRRE IQQEADYLLS  60
AAAQAPPPMF SGYGQSGEMT AVVTALTQVM SSQRSGGEQW RFGGAAAAPS LAAGGYSVNS  120
PSSTYSSTSS SSGAGQKRRR EQEESVSQIP EHVQRVYGGF GEFRTPAETT SSSVKSEEGG  180
GIVRPPAETA AATVAAGTSE DQETGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  240
DTAEAAARAY DEAALRFRGN RAKLNFPENV RLMPPPPQPR PQAAATRLHA PAIAPPRPPL  300
MFQAPPHAAV HGGAGGISGD YWEYSQLLQN PGELLSQPPR SLLEQMYFAS SMAVLHSHSM  360
PNSSSAASAS PSSSSSFPLL FSAAQPSTES TFFRPPSTQS PATSSNFRPP FWTSSAHYPP  420
SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22209270466ATERF1
3gcc_A2e-22209270466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERRRRY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-36AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153420.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S4B2I51e-101A0A1S4B2I5_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009777816.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-16ethylene response factor 110