PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000084.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 532aa    MW: 58729.1 Da    PI: 6.967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000084.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.64.1e-2947131187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++qe+ aL+++r+em+  +r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+  +++++s  +++fdqle
  Itr_sc000084.1_g00022.1  47 RWPRQETIALLKIRTEMDAGFRDSSHKAPLWEEVSRKMAELGYRRSSKKCKEKFENVYKYHKRTKDGRAFKSDGKS--YRFFDQLE 130
                              8********************************************************************9766665..*******8 PP

                 trihelix  87 a 87 
                              a
  Itr_sc000084.1_g00022.1 131 A 131
                              5 PP

2trihelix103.71.4e-32362447187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k e+ aLi++r++m+++++++  k+plWeev++ m++ g +r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qle
  Itr_sc000084.1_g00022.1 362 RWPKPEIEALIRIRTSMDTKYQENGPKGPLWEEVAAEMQKLGHRRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLE 446
                              8*********************************************************************8.99***********8 PP

                 trihelix  87 a 87 
                              a
  Itr_sc000084.1_g00022.1 447 A 447
                              5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.07340104IPR017877Myb-like domain
SMARTSM007170.00644106IPR001005SANT/Myb domain
PfamPF138371.0E-1846131No hitNo description
CDDcd122032.17E-2546111No hitNo description
PROSITE profilePS500907.48355419IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-4356418IPR009057Homeodomain-like
SMARTSM007170.011359421IPR001005SANT/Myb domain
PfamPF138377.3E-22361448No hitNo description
CDDcd122032.62E-26361426No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MLDFSGGIVR DGAAEAPESG GEAHFGGEDA AARAEEGGGE RNSGGNRWPR QETIALLKIR  60
TEMDAGFRDS SHKAPLWEEV SRKMAELGYR RSSKKCKEKF ENVYKYHKRT KDGRAFKSDG  120
KSYRFFDQLE AFGNHSTPAA AAAAVVSAPV PAGGGQVTVS SIPEPFSAPI PANSPPFPPP  180
SQPLLGAAAE KGAGNVFPVG RNNNNSSASL LWCQTSSSST SSDEDIQRRH GRKRRRKDFF  240
ERLMRDVIEK QENMQKKFLE TIEKREIERT AREEAWRAQE TARINRDHDL LIQERSMAAA  300
KDAAVIKLLQ TIAEKNNIQI PTAARGGDFQ PPPPSTTVSP PKTAVAPPPT DNNNNSPVHN  360
SRWPKPEIEA LIRIRTSMDT KYQENGPKGP LWEEVAAEMQ KLGHRRNAKR CKEKWENINK  420
YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKSKIEASMH PLEAENSPIM ARPEQQWPPA  480
APGHNADHND DNEEEEEDNS DDDDNEAGGG YEVLPTPGSG AGAGGAATGT AE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2231237RKRRRKD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152906.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-137TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7JB431e-170A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-83Trihelix family protein