PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000084.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Trihelix | ||||||||
Protein Properties | Length: 532aa MW: 58729.1 Da PI: 6.967 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.6 | 4.1e-29 | 47 | 131 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+ aL+++r+em+ +r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++++s +++fdqle Itr_sc000084.1_g00022.1 47 RWPRQETIALLKIRTEMDAGFRDSSHKAPLWEEVSRKMAELGYRRSSKKCKEKFENVYKYHKRTKDGRAFKSDGKS--YRFFDQLE 130 8********************************************************************9766665..*******8 PP trihelix 87 a 87 a Itr_sc000084.1_g00022.1 131 A 131 5 PP | |||||||
2 | trihelix | 103.7 | 1.4e-32 | 362 | 447 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+ aLi++r++m+++++++ k+plWeev++ m++ g +r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qle Itr_sc000084.1_g00022.1 362 RWPKPEIEALIRIRTSMDTKYQENGPKGPLWEEVAAEMQKLGHRRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLE 446 8*********************************************************************8.99***********8 PP trihelix 87 a 87 a Itr_sc000084.1_g00022.1 447 A 447 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 40 | 104 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.006 | 44 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.0E-18 | 46 | 131 | No hit | No description |
CDD | cd12203 | 2.17E-25 | 46 | 111 | No hit | No description |
PROSITE profile | PS50090 | 7.48 | 355 | 419 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-4 | 356 | 418 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.011 | 359 | 421 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.3E-22 | 361 | 448 | No hit | No description |
CDD | cd12203 | 2.62E-26 | 361 | 426 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MLDFSGGIVR DGAAEAPESG GEAHFGGEDA AARAEEGGGE RNSGGNRWPR QETIALLKIR 60 TEMDAGFRDS SHKAPLWEEV SRKMAELGYR RSSKKCKEKF ENVYKYHKRT KDGRAFKSDG 120 KSYRFFDQLE AFGNHSTPAA AAAAVVSAPV PAGGGQVTVS SIPEPFSAPI PANSPPFPPP 180 SQPLLGAAAE KGAGNVFPVG RNNNNSSASL LWCQTSSSST SSDEDIQRRH GRKRRRKDFF 240 ERLMRDVIEK QENMQKKFLE TIEKREIERT AREEAWRAQE TARINRDHDL LIQERSMAAA 300 KDAAVIKLLQ TIAEKNNIQI PTAARGGDFQ PPPPSTTVSP PKTAVAPPPT DNNNNSPVHN 360 SRWPKPEIEA LIRIRTSMDT KYQENGPKGP LWEEVAAEMQ KLGHRRNAKR CKEKWENINK 420 YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKSKIEASMH PLEAENSPIM ARPEQQWPPA 480 APGHNADHND DNEEEEEDNS DDDDNEAGGG YEVLPTPGSG AGAGGAATGT AE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 235 | RKRRR |
2 | 231 | 237 | RKRRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152906.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-137 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A3Q7JB43 | 1e-170 | A0A3Q7JB43_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g056510.1.1 | 1e-170 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-83 | Trihelix family protein |