PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000083.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 595aa    MW: 64702.5 Da    PI: 7.3352
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000083.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.6e-11432490563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +a l+s++
  Itr_sc000083.1_g00028.1 432 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQN 490
                              9****************************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-18428492IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852430493IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-11432489No hitNo description
SuperFamilySSF579596.12E-11432483No hitNo description
PfamPF001706.2E-10432490IPR004827Basic-leucine zipper domain
CDDcd147032.33E-24433484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGGNGEEVNT DMIHRLQSSF GKSSSPVLPK QQQPGSMNQL DIPQLNTSQF QSQMRQFSPN  60
FSSENTSKRA GIPPSHPQMP PISPYSQIPV SRQVNQQMGV QNFSTSSPGP SHSRSLSQPS  120
FFSLDSLPPL SPSPYRESPL TSLTDHMSTD ASMGERDGNS HSLLPPSPFS KCNSMRAGES  180
LPPRKSHRRS NSDIPFGFSS ILQSSPPLVP LGSAGALDRS LPGKENSGGK PVQLVKRETS  240
VDKGCESNAE GMGERKSEGE VVDDLFSAYM NLDTIDALNS SGADEKLGSE NHEDLDSRAS  300
GTKTNGADSS DNEATSSVNE SGNSMHMSGM PSSTEKREGV KRNAGGDIAP TTRHYRSVSM  360
DSFMGKLNFS DDSPKLPPSP GTRPGNLSPT NSLDSNSNTF SLEFGNGEFS GAELKKIMAN  420
EKLAEIALTD PKRAKRILAN RQSAARSKER KMRYIAELEH KVQTLQTEAT TLSAQLTLLQ  480
RDSAGLTSQN NELKFRLQAM EQQAQLRDAL NEALTAEVQR LKIATAELNG EATKFQQLSI  540
NPQMLPMHQH QSARVNMHQL QQQQQHQQSS QSQSQAHGQP QPQHNNTASA KHESK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165371.10.0PREDICTED: transcription factor RF2a isoform X2
TrEMBLA0A328D3T40.0A0A328D3T4_9ASTE; Uncharacterized protein
TrEMBLA0A484LPM40.0A0A484LPM4_9ASTE; Uncharacterized protein
STRINGXP_009804619.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-143bZIP family protein