PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000079.1_g00102.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 446aa    MW: 49388.3 Da    PI: 8.4253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000079.1_g00102.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16347428179
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                              f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+
  Itr_sc000079.1_g00102.1 347 FEKVLSASDAGRIGRLVLPKACAEAYfpAINHSEGIAIRVQDIKGQEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDT 428
                              99**************************888999******************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-16344428IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-23344428IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-19345428No hitNo description
PfamPF023622.0E-13347428IPR003340B3 DNA binding domain
PROSITE profilePS508639.474347446IPR003340B3 DNA binding domain
SMARTSM010192.6E-11347445IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGSKFCMNEL CRATTSSEWK KGWGLKSGGF ATLCSNCGAV WGYGDFGSLK RAGLFFLSAY  60
EHLAFCDMFH MNDSGWRECR MCGKASSITY LYDYMDFGGI GCMSCARRLG GHALRPIQTP  120
NDDIPNGTLT MNKIGDTQRV DTENRMDEND FDKGRLLHLS RTMEAHKPGQ LFQSQNNGKI  180
KQEAAVPIRE VACLPNLNQQ SVETSIFGKT DINIPKQGVK DTYESINQTP MNFSLSTPVG  240
TSSSALHILA GIVEGREQNK VSPFQQGQKA HHILPKPVKA AHSSGSEPKK GMTTPNRIAR  300
PPGEGRGGRN QLLPRYWPRI TDQELQKLSG EYPCSIIILK SNIVPLFEKV LSASDAGRIG  360
RLVLPKACAE AYFPAINHSE GIAIRVQDIK GQEWTFQFRF WPNNNSRMYV LEGVTPCIQS  420
MQLQAGDTDS VFEAIANLLF VSPCKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-533184282105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178653.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_019178654.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X2
TrEMBLA0A484NK040.0A0A484NK04_9ASTE; Uncharacterized protein
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.14e-97HSI2-like 1