PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000078.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 147aa    MW: 16269.5 Da    PI: 9.2188
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000078.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY133.72.3e-4151414159
                    YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 
                              + sse++Cyv+C+fCnt+lav +P + ++++vtv+CGhC++l           l++   l+ + +++ +++  v+ + +k  ++++
  Itr_sc000078.1_g00024.1   5 QPSSEHLCYVRCSFCNTVLAVGIPCKRVLETVTVKCGHCSNLSF---------LSTRPPLQPQCHDHHANNFPVSCNGFKRGQSSS 81 
                              5789************************************9754.........233333333444455555555555555544444 PP

                    YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                              +s+++          ++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn
  Itr_sc000078.1_g00024.1  82 SSPTS----------SEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN 141
                              44443..........4456899999********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.5E-507141IPR006780YABBY protein
SuperFamilySSF470953.27E-789139IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDLSQPSSEH LCYVRCSFCN TVLAVGIPCK RVLETVTVKC GHCSNLSFLS TRPPLQPQCH  60
DHHANNFPVS CNGFKRGQSS SSSPTSSEPS SPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ  120
RIKAANPEIP HREAFSAAAK NNHINNT
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8548005e-40AY854800.1 Nicotiana tabacum isolate 2 CRABS CLAW mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180619.15e-89PREDICTED: protein CRABS CLAW
SwissprotQ76EJ01e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A484LKF02e-87A0A484LKF0_9ASTE; Uncharacterized protein
STRINGVIT_01s0011g00140.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-54YABBY family protein