PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000073.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 671aa    MW: 74508.1 Da    PI: 4.8214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000073.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14476522455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Itr_sc000073.1_g00007.1 476 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 522
                              7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-4912196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.447472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-19474534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18476531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11476521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-15476526No hitNo description
SMARTSM003531.4E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.1E-4599651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAAENPVGGR LETLLQTAVQ SVQWTYSLFW KLCPHNGMLV WSDGYYNGAI KTRKTVQGTE  60
VSAEEASLHR SQQIKELYES LSSTAEESNG GGAGQQPPRR PSAALSPEDL TESEWFYLMC  120
ISFSFPSALG LPGKAYAKRQ HIWLTGANEV ESKVFSRAIL AKTVVCIPLM DGVVELGTTE  180
RVKEDYEFIQ LIKNHFMEPH PHHHHHHPKP ALSEHSSSEP PSQQLHSPVM ASGHHRQVRA  240
EEEDEEEDED EEEEEEDDDE EDEAEELQSD ADVSPKNQQT GDHVMAAEEE EEEGEENING  300
VVAETTNVAA ASELMQFEMS ESIRLGTPDD ASTDLDSDFH LLPQMPHCQN PNFLSHQGAP  360
IMDEFSREET HYSETISSIL RHQCGQWSEF STTVAGDYVA HSATSAFSSW ATAATSTCST  420
HRSSAQWILK YALLTVPFLH EKNSHVGAGA AADGGDATIP SSKLCKAAPQ EEPNANHVLA  480
ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRRRIQELEA ARGSAWEVDR  540
QSITGGVTRK NPAQKCGASR TLMGPTLRKR GMRTAERPAN DTAEDAVVQV EVSIIESDAL  600
VEIRCTYREG LILDVMQMLK ELGLEITTVQ SSVNGGIFSA ELRAKLKENL KGRKATIMEV  660
KKAIHSIIPQ F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2041966192Transcription factor MYC3
4rqw_B2e-2041966192Transcription factor MYC3
4rs9_A2e-2041966192Transcription factor MYC3
4yz6_A2e-2041966192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRE
2481486RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3378630.0JQ337863.1 Ipomoea batatas bHLH2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197481.10.0PREDICTED: truncated basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLI1SRC30.0I1SRC3_IPOBA; Putative transcription factor BHLH2
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-79bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]