PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 969aa    MW: 104732 Da    PI: 8.6293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192676256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++ GVr+++ +grWvAeI+d s   +r r +lg+++taeeAa+a+++a+++l+ge
  Itr_sc000071.1_g00023.1 26 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTAEEAARAYDEAARALRGE 76
                             589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-282682IPR001471AP2/ERF domain
PfamPF008472.4E-142676IPR001471AP2/ERF domain
SMARTSM003809.0E-362689IPR001471AP2/ERF domain
PROSITE profilePS5103220.4812683IPR001471AP2/ERF domain
CDDcd000181.99E-302682No hitNo description
SuperFamilySSF541712.55E-192783IPR016177DNA-binding domain
PRINTSPR003678.1E-72738IPR001471AP2/ERF domain
PRINTSPR003678.1E-74965IPR001471AP2/ERF domain
SuperFamilySSF495622.03E-10315386IPR000008C2 domain
Gene3DG3DSA:2.60.40.1501.7E-9315384IPR000008C2 domain
PfamPF001682.2E-8316383IPR000008C2 domain
Gene3DG3DSA:1.25.10.106.1E-61564959IPR011989Armadillo-like helical
SuperFamilySSF483718.0E-44565947IPR016024Armadillo-type fold
SMARTSM0018536594634IPR000225Armadillo
CDDcd000204.22E-6599716No hitNo description
SMARTSM001858.9676716IPR000225Armadillo
CDDcd000201.07E-10683798No hitNo description
SMARTSM0018551717758IPR000225Armadillo
SMARTSM001854.8760798IPR000225Armadillo
SMARTSM0018523799838IPR000225Armadillo
CDDcd000203.04E-12803922No hitNo description
PfamPF005148.6E-5804837IPR000225Armadillo
SMARTSM001851839879IPR000225Armadillo
SMARTSM0018517880922IPR000225Armadillo
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MAASETPVIT NRAGNKAEIT KSVTRRFVGV RQRPSGRWVA EIKDSSQRVR LWLGTYDTAE  60
EAARAYDEAA RALRGENART NFGLPAPASS PISSVHSEES GSSSDGKVGL SFSSLKAKLS  120
KNLQSIMARR NSEHKSSKSR VSDHFTFANI FHLRNNYRPC LSHNNYQFQA AVDMKKMEKA  180
VVQPSIVVPS AAAAAYYCSW ETSSSSMSDC SSSEWMMGFG RQHNNNLDSD GSEASEAAAF  240
LGEQEHQMMG GGLGWGSSPD TMSASSGELG SRSKRFKVSS SVLVPPTFTQ SPPSSHLLIF  300
SFWKQWFEGS GVKTEVGKTD PYVILRLGDQ VIRSKRNSQT TVIGPPGEPI WNQDFHMLVA  360
DPSRQKLYVE VKDSLGFADV TVGRGEEKQS NSYSEIKYLP GAVLCSIGRS LVMIGKMVEC  420
GGGNAVDILS AEDWLLRAQE LVPVALETAR GVRGFPGRWK MIISKLEQIP SRLSDLSSHP  480
CFLKNALCKE QLLAVTKTLN EAIELAGMCV KEKYDGKLQM QSDLDTLSGK LDLNLHDCGI  540
LIKTGVLGEV TLSSAAASTS FRSNLRELLA RLQIGHLEAK HRALDSLLEA MKEDEKNVLA  600
VLGHSNIAAL IQLLTATSPQ IREKTVRIFC SLAESGCCEK LLVSESVLPP LIRLVESGTP  660
LAKEKATISL QRLSMSTETA QSIVGYGGVR PLIEICRTGD SVSQAAAACT LKNVSAVPDV  720
QQVLAEEGVV KVMISLLNCG ILLGSKEHAA ECLQNLSSGN DDLKRHIISE GGVQSLLVYL  780
DGPLPQESAV GALKNLVSSI SLEVLISLGV LPRLVHVLKS GSPGAQQASA TAICRICTSA  840
ATKKTVGEAG CIPLLVKTLE AKANSTREVA AQALYTLMTL SYNCREVKKD NRSVPNLVQL  900
LDPSPQNSAK KYAVSCLTLL TSSRNCKRLM VSYGAIGYLK KLTEMDVPGA NTLLELLERG  960
TLRSLFSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rv1_A3e-165959422407Engineered Protein OR497
4rv1_B3e-165959422407Engineered Protein OR497
4rv1_C3e-165959422407Engineered Protein OR497
4rv1_D3e-165959422407Engineered Protein OR497
4rv1_E3e-165959422407Engineered Protein OR497
4rv1_F3e-165959422407Engineered Protein OR497
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158693.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158694.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158695.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158696.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158697.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158698.10.0PREDICTED: uncharacterized protein LOC109155557
RefseqXP_019158699.10.0PREDICTED: uncharacterized protein LOC109155557
TrEMBLA0A2G9HFG40.0A0A2G9HFG4_9LAMI; Armadillo repeat protein VAC8
STRINGXP_009598446.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-15related to AP2 11