PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000065.1_g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 366aa MW: 40791.9 Da PI: 9.7115 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.3 | 7.8e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g Itr_sc000065.1_g00030.1 62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARVYDIAAQRFRG 110 689***9788.8*********3.....5*************************98 PP | |||||||
2 | B3 | 101.4 | 5.2e-32 | 189 | 289 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk+ ae+h g ++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v Itr_sc000065.1_g00030.1 189 FEKAVTPSDVGKLNRLVIPKQQAEKHfplqnGAVTSKGVLLNFEDTNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVS 274 89*****************************99999************************************************** PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+++ e++l++ + Itr_sc000065.1_g00030.1 275 FHRSTGPEKQLYIDW 289 **8766777777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-16 | 62 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.20E-24 | 62 | 117 | No hit | No description |
Pfam | PF00847 | 2.9E-7 | 62 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-28 | 63 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.757 | 63 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-19 | 63 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 178 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-32 | 184 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-29 | 187 | 278 | No hit | No description |
Pfam | PF02362 | 2.2E-28 | 189 | 290 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-26 | 189 | 293 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.128 | 189 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MDASTPSSID ESSSSDSMSV ALNLPPATKS PESLCRMGSG ASVIIDAENG VEAESGRKLP 60 SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARV YDIAAQRFRG RDAVTNFKPL 120 SETTANGDDY EAVFLSSHSK AEIVDMLRKH TYADELEQSR RAFNINNNNN MSARKPEADR 180 SAKSRERLFE KAVTPSDVGK LNRLVIPKQQ AEKHFPLQNG AVTSKGVLLN FEDTNGKVWR 240 FRYSYWNSSQ SYVLTKGWSR FVKEKSLKAG DIVSFHRSTG PEKQLYIDWK PRNGTGSDIP 300 VHPVQVFRLF GVNILSKSST VVSPMAMAAM DTTNNISSCS GGKRIREVME FLPLECSKKQ 360 RVIDAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-59 | 186 | 298 | 11 | 123 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00025 | PBM | Transfer from AT1G68840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181230.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | P82280 | 1e-144 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A484LNG3 | 0.0 | A0A484LNG3_9ASTE; Uncharacterized protein | ||||
STRING | EOY02136 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-144 | related to ABI3/VP1 2 |