PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000057.1_g00028.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 355aa MW: 41074 Da PI: 4.3298

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000057.1_g00028.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.7e-15	113	198	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+++ e+ +l+r++l++ +W +v++k+ + g+e+s + C++ ++ l+k+ykk++e ++k + ss++p+f++++ Itr_sc000057.1_g00028.1 113 WSEEESFVLLDVWGERYLELGRRSLRGEDWVDVAEKVsEMIGVEKSEVDCRNQLDVLKKKYKKEREKMEKMGGGFSSKWPFFKKMD 198 ***********************************5568*************************99***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-20	112	199	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDDSDDEGRY SQKPTSVYSF SSRSRRPIRN PSSYPKDTHY SRYKNEYECD DTEESDEGED 60 DPEFNGGAEN GYDFRNKKKR KMESLVSNYE FAPRAVGNLQ GTTRGGGSSR GAWSEEESFV 120 LLDVWGERYL ELGRRSLRGE DWVDVAEKVS EMIGVEKSEV DCRNQLDVLK KKYKKEREKM 180 EKMGGGFSSK WPFFKKMDVL MNLRMKGHCG LGCGVDSGEY VFMDPRMYLD RSNVMDEMRD 240 SPAGSDVDNE DEQEETEGEA GWEEDEESAK LLAESIQRFG DIYEKIENSK RKQMMELEKM 300 KWEFQRELEM QKKQIVERAQ AEIAKIRDTE DSGGDDDEDD EEEENNNVSA EKLNG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDDSDDEGRY SQKPTSVYSF SSRSRRPIRN PSSYPKDTHY SRYKNEYECD DTEESDEGED  60
DPEFNGGAEN GYDFRNKKKR KMESLVSNYE FAPRAVGNLQ GTTRGGGSSR GAWSEEESFV  120
LLDVWGERYL ELGRRSLRGE DWVDVAEKVS EMIGVEKSEV DCRNQLDVLK KKYKKEREKM  180
EKMGGGFSSK WPFFKKMDVL MNLRMKGHCG LGCGVDSGEY VFMDPRMYLD RSNVMDEMRD  240
SPAGSDVDNE DEQEETEGEA GWEEDEESAK LLAESIQRFG DIYEKIENSK RKQMMELEKM  300
KWEFQRELEM QKKQIVERAQ AEIAKIRDTE DSGGDDDEDD EEEENNNVSA EKLNG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191937.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A328CV80	1e-177	A0A328CV80_9ASTE; Uncharacterized protein
TrEMBL	A0A484KM03	1e-177	A0A484KM03_9ASTE; Uncharacterized protein
STRING	XP_009783625.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-68	Trihelix family protein