PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000051.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 315aa    MW: 34010.6 Da    PI: 6.8549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000051.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-1496147155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Itr_sc000051.1_g00004.1  96 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 147
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-1494151No hitNo description
SuperFamilySSF474591.57E-1794167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1596166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEALSTTP CNNDPFNFIF YDATLSAGDG NAWPEIQDLT AGGVGGGLNG GCSAVEPGRS  60
GNLVGEGSQG GGGAGGRKKR RRRPKVCKNK EEAETQRMTH IAVERNRRKQ MNEHLAVLRS  120
LMPESYVQRG DQASIVGGAI EFVKELEHLL QSLEAEKLRL QRQQQQPAAG DGATATCKTD  180
DLAVASGTSV NPFWQFFAYP QYTCSSPPLI PNKCTSKTSA AAADIEVTLI ETHANVRILS  240
PRRKARQLSK MVAAFQTIMC MSVLHLNVTT FDLLVLYSIS AKVEGGCQLS SADEIAEAVH  300
HILRGIEEEE VTIIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RKKRRRR
27782KKRRRR
396107RMTHIAVERNRR
4240246PRRKARQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156219.11e-151PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T42e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6PCZ41e-107A0A2R6PCZ4_ACTCH; Transcription factor bHLH71 like
STRINGcassava4.1_012613m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]