PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000038.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRF | ||||||||
Protein Properties | Length: 534aa MW: 57634.1 Da PI: 8.8158 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 191 | 235 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Itr_sc000038.1_g00010.1 191 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 235 79****************************************985 PP | |||||||
2 | QLQ | 62 | 1.6e-21 | 123 | 159 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k Itr_sc000038.1_g00010.1 123 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 159 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-12 | 123 | 159 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.516 | 124 | 159 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.2E-16 | 124 | 158 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 191 | 235 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.1E-21 | 192 | 234 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MDFGGVLGGL DTGVLPATAS VFSDVESKLK WCGSGGFLKQ ERPAPDDWRE TKFAKTSTAA 60 ILRSNANPVS ESGQQMLSFS SPNSQTLPLP SYHHQISAAF SRNSGYGGLN SGNMHGLVSG 120 VRGPFTPSQW MELEHQALIY KYITANVPIP PYLLNPIRKA FDSAALSAYS GLRANSFGWG 180 AFHLGFSNTT DPEPGRCRRT DGKKWRCSRD AVADQKYCER HMNRGRHRSR KPVEGQASHS 240 ALGTTAATKL MPATSSASAA AVVPGGSVSD SIGFSNQNNL QPFATNNPSP QSHLYRSFLD 300 KGNRGETYQD ATGLQILSPG KKESQQHSII KNQHSYEAPS RSGFGLVCSN PLLNPEDVSD 360 RESKTRHSLH QFMDDWPKNQ PDIDLQSDQT RLSISIPMST SDFMSSTSSP VSEKLAASPL 420 KLSWEHETTQ MGLGVGAVIN ERNQRQGNWI PIAWESSVGG PLGEVFHSTN SKSSDCKNAS 480 ALNLMEGWDG SPRMASSPTG VLQKAAFCSH SNSSAGSSPR AENSVMNPPS LRAL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 3e-38 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 3e-38 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174776.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A068TXM5 | 0.0 | A0A068TXM5_COFCA; Uncharacterized protein | ||||
STRING | Solyc04g077510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-83 | growth-regulating factor 1 |