PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000030.1_g00044.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 669aa    MW: 73857.9 Da    PI: 7.6461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000030.1_g00044.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18281380198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kvlt sd+++ grlvlpk +ae++   +++ e+  +t++d +g++W++ +++  +++s++yvl+ G     ++ +L++gD+v+F
  Itr_sc000030.1_g00044.1 281 FDKVLTASDAGRIGRLVLPKACAEAYfpPIDQSEGLPITIQDITGKEWTFLFRFwlNNNSRMYVLE-GVTPCIRSMQLQAGDTVTF 365
                              89**************************5555566679**************998999999****9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  +++lv+++++
  Itr_sc000030.1_g00044.1 366 SRID-PGGKLVMSFRK 380
                              *887.77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-29277386IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-25279380No hitNo description
SuperFamilySSF1019361.02E-22279382IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.18281382IPR003340B3 DNA binding domain
SMARTSM010191.1E-21281382IPR003340B3 DNA binding domain
PfamPF023621.3E-15281380IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MESAICMNEL CRGATSSSEW KKGWSLKSGG FAKLCYNCGS AYENVAFCEM FHLDESGWRK  60
CRICGKHIHC GCIASKYLYE YMDYGGIGCV SCVSRLGNHA LRSVXSVQPI GVENRVDGSN  120
SAKGKLLKFS NAVETCESVQ HLGTWVDDNI KQEKRKLSGS QVETCLPNLN ACESFDQPSN  180
FSLNTPVNCS SSFNGGREQN MVSPLHQGQS VHHMLPKQPK ASQNHDSKPK GGTKTQTNIV  240
RPPAEGRGGR ARLLPRYQSK ITDQELQQIS GDLKSTVVPL FDKVLTASDA GRIGRLVLPK  300
ACAEAYFPPI DQSEGLPITI QDITGKEWTF LFRFWLNNNS RMYVLEGVTP CIRSMQLQAG  360
DTVTFSRIDP GGKLVMSFRK GTNNGDTQGS QHSNLPGSGC VSDNHTKKTQ NIGSKRKRFL  420
MQVEDAIELR ITMEEAQDLF CPPPSLKPTI LTIDNIEFEA YHEPPVFGKA TISVPDEINQ  480
TEPDTSLRVT NGSKRQKVVT EKTNDREPSG LNALNTDTVA EDNTGGLGKH SVGATTKHPR  540
HHPGCACIVC IQPPSGTGKH QPNCDCNICS TLRRRLNTFN QRKKKRQSDH ETELAVGKDK  600
LPPPKDASER DTANEPGAIH MNHSENNSDL NRQRYPPMDV RSSLGQLDLN CHPSCEDDLQ  660
VEVDHIEVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-672603893132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163082.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A1J6I6X90.0A0A1J6I6X9_NICAT; B3 domain-containing protein
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-156high-level expression of sugar-inducible gene 2