PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000013.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 330aa    MW: 36892.3 Da    PI: 8.7458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000013.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33101362102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............. CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............. 74 
                              Fl+k+y++++d++++++isws+ g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+Y  + vk   k  +              
  Itr_sc000013.1_g00024.1  10 FLMKTYQLVDDPATNDVISWSDGGSTFVVWKTAEFAKDLLPSYFKHNNFSSFVRQLNTYKTRDVKAGVKPGAIyplqqlksgswrl 95 
                              9**********************************************************999999988765549999999999999 PP

                              ...........X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  75 ...........k..ekiweFkhksFkkgkkellekikrkks 102
                                         k  ++ weF++++Fk+g+kell++i+r+k+
  Itr_sc000013.1_g00024.1  96 riritltkgfrKivPDKWEFANENFKRGEKELLSSIRRRKT 136
                              999888776651669***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-456134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-367134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.25E-317134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2810134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSQRTVPAPF LMKTYQLVDD PATNDVISWS DGGSTFVVWK TAEFAKDLLP SYFKHNNFSS  60
FVRQLNTYKT RDVKAGVKPG AIYPLQQLKS GSWRLRIRIT LTKGFRKIVP DKWEFANENF  120
KRGEKELLSS IRRRKTVTSA AASRKPEVAD NSALPESSGE EPGSSSTSSP DSKNPGSVDT  180
PGKSQFPDLT DENEKLKRDN QMLSSELAQT KKQCEELVTF LTQYVKVVPE QINRIMSQGI  240
SGSSHDDSIN KVDNSSQNKD EDEDEDDDEN GETLKLFGVL LKEKKRKRDH GDNTDFSAPS  300
TKEMKPSIDC KNAPWMKISP APGKSGKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-20613917125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195566.11e-180PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-122HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A314KLD51e-138A0A314KLD5_NICAT; Heat shock factor protein hsf24
STRINGXP_009797839.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-71heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]