PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000010.1_g00066.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 396aa    MW: 43467.9 Da    PI: 5.7556
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000010.1_g00066.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.96e-2294200271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse........................................dvknkrRRi 46 
                              ++++Lr++++k   ++ek+e+ g++t+nev  + +                                          d+kn+rRR+
  Itr_sc000010.1_g00066.1  94 SGRGLRQFSMK---VCEKVESkGRTTYNEVDMNVICVtlcclfvdmwimpdilvadelvaefsdpnnsfaspdqqqyDEKNIRRRV 176
                              689********...*****999*********9998889************************************************ PP

                  E2F_TDP  47 YDilNVLealnliekkekneirwkg 71 
                              YD+lNVL+a+++i+k +k+ei+wkg
  Itr_sc000010.1_g00066.1 177 YDALNVLMAMDIISK-DKKEIQWKG 200
                              ***************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-4389205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-3093200IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2195200IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-1796201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.1E-58226389IPR014889Transcription factor DP, C-terminal
CDDcd144582.83E-39233328IPR014889Transcription factor DP, C-terminal
PfamPF087811.9E-37235337IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.48E-39236339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVNNREDGEK NPSIGGNSGV TRSWGTTFSG QSVSTSGSVG SPSSRSEAAM ATPASETTFA  60
RLDGLDIHGD DAGSQRSAAG KKKRAQRAVG GDKSGRGLRQ FSMKVCEKVE SKGRTTYNEV  120
DMNVICVTLC CLFVDMWIMP DILVADELVA EFSDPNNSFA SPDQQQYDEK NIRRRVYDAL  180
NVLMAMDIIS KDKKEIQWKG LPRASVNDVE ELKVPGVDAE FQKRLALVDM LGWTESLGLR  240
NRIEKKAAYL EELEEQYTGL QNLIKRNEQL YSSGNTPSGG VALPFILVQT RPHATVEVEI  300
SEDMQLVHFD FNSTPFELHD DNYVLKAMKF CERPKSNAVA RNLSANGWEG SSNTNTSQSQ  360
IPHPPMPNIP GRSATSPPIP GILKPCVKHE PPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3487202190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188105.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-147DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7ZXU40.0A0A1U7ZXU4_NELNU; transcription factor-like protein DPB isoform X2
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-124Transcription factor DP