PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000010.1_g00057.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 271aa MW: 30253.1 Da PI: 8.1081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000010.1_g00057.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.4	7.1e-15	80	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N f+ Lr+llP+ + ++ ++s +++ ++v+YI +Lq Itr_sc000010.1_g00057.1 80 KKLSHNASERDRRKKMNGLFSSLRSLLPPsD---QKARMSIPTTVSRVVKYIPELQ 132 6789***********************66...9999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.951	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-15	80	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	80	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-12	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.59E-13	80	136	No hit	No description
SMART	SM00353	5.0E-11	85	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGWSIDDYIS HEQFGTDLYS NAASDTSPHA PPQHFLSVSL PSSPLPPAME RCDSLKFDGG 60 STDIGSGGGG GGEAAAGMVK KLSHNASERD RRKKMNGLFS SLRSLLPPSD QKARMSIPTT 120 VSRVVKYIPE LQKELERLQK KKQELTSRVN SWQKLSASPP EFNKRRRVVG GHPHHRQSYL 180 SASQVGERDI VIQICSKKGA KNLFADALSC LEQEGLLLLD SSTFQTSEDR VNFYTLHLQV 240 QGIEVMEVDK LKEKLLSYFN EEQQNFYHDT N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186357.1	1e-162	PREDICTED: transcription factor ORG3-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56980.1	7e-16	bHLH family protein