PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000004.1_g00041.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 384aa    MW: 42682.3 Da    PI: 5.9053
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000004.1_g00041.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-062159439
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                             r+C+ + +   + +C+++  +lC  C  ++H+    H++
  Itr_sc000004.1_g00041.1 21 RVCDVCRSATCTVYCRTDTAYLCSGCDAHIHRTataHER 59
                             79*****************************77888876 PP
2zf-B_box27.28e-0960105342
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                               ++C+ +e+ ++ + C+ +   lC+ C    H+       H +vp+
  Itr_sc000004.1_g00041.1  60 VWVCEACERAPAAFLCKADAASLCAACDADVHSAnplarrHHRVPI 105
                              689*****************************66889999877775 PP
3CCT70.34.8e-24315358144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Itr_sc000004.1_g00041.1 315 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 358
                              9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3671862IPR000315B-box-type zinc finger
SMARTSM003360.0911856IPR000315B-box-type zinc finger
CDDcd000213.38E-82162No hitNo description
PROSITE profilePS5011911.14958105IPR000315B-box-type zinc finger
SMARTSM003364.0E-1458105IPR000315B-box-type zinc finger
PfamPF006433.3E-759105IPR000315B-box-type zinc finger
CDDcd000214.44E-961105No hitNo description
PfamPF062037.5E-18315357IPR010402CCT domain
PROSITE profilePS5101716.648315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLAEEKGYGS SLDLDVNKWA RVCDVCRSAT CTVYCRTDTA YLCSGCDAHI HRTATAHERV  60
WVCEACERAP AAFLCKADAA SLCAACDADV HSANPLARRH HRVPILPIYG PPPATAGVGS  120
VMIRPAAGDT PDDDEFLTHD AGETTIDEDD EDEAASWLLL NPTPAKNNDN INQERVNNNI  180
KEESENACID LLEYSSCQEN QFNDHHYNLN QSHHYSVPEK NMSYGGDSVV PNKTHLQYYH  240
THNQTHHGSF QLQGMEYETS TPGYGYPAYS HSVSVSSMDV GVVPESTTSD VSISHSRPPK  300
GTIDLFSGPP VPMDREARVL RYREKKKTRK FEKTIRYASR KAYAETRPRI KGRFAKRTDA  360
EGEVDQMFFT PSMAESGYGI VPLL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185684.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-113COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0A0N1W61e-154A0A0A0N1W6_COFAR; Constans-like protein
TrEMBLA0A0A0N2M21e-154A0A0A0N2M2_COFAR; Constans-like protein
STRINGSolyc02g089540.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.13e-81CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]