PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000003.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 369aa    MW: 41614.3 Da    PI: 7.1389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000003.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12193239455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++++k+Lq
  Itr_sc000003.1_g00017.1 193 DHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKHLKQLQ 239
                              699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16193251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-16193255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-11194243No hitNo description
SMARTSM003534.1E-14195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEIANMRSLA ELVRLLLQFQ DFVCLGQPSQ TDKVVRLGME DSAYLQHWPI CSLDELSAIP  60
VSATFNDTLH PPFSHQLHHH QPIYGVKRPL ELSQACEEDA AMKHPRTNSW SSSENDQAFS  120
SQSVHQSFHV VNSDYSNQIR TRRPKEETIS HNPSAITFHA DNHHILSQDP FLNQNFVFKA  180
SQGAKKISNT AQDHIIAERK RREKLSQRFI ALSALVPGLK KMDKASVLGD AIKHLKQLQE  240
RVKMLEEQTR KKSAQSVVFV KKYEVLADAE NSSSDENLSG VDESLPEIEV RISDKDVLVR  300
VHCEKSKGVV DRTVAELEKL HLSVTNSTAM SFGSSALDIT IIAQMDEKFP MTVKDIVMNL  360
RSALKMQPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169484.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0724e-63BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S4B5E31e-134A0A1S4B5E3_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7WH051e-134A0A1U7WH05_NICSY; transcription factor bHLH18-like
STRINGXP_009779237.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-65bHLH family protein