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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000002.1_g00042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 506aa MW: 54606.6 Da PI: 8.2712 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 232 | 291 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +v+++tYeg+Hnh+ Itr_sc000002.1_g00042.1 232 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSVLITTYEGTHNHP 291 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-32 | 217 | 293 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 225 | 293 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.575 | 227 | 293 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-37 | 232 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-27 | 233 | 291 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MADSLDISGD GAAKQKAGDT LAGRQEGFMK AVLKKDEGRA AATVKAEMKE VKEENARLKT 60 LLAKIEKDYS SLQMRFFDVF SHQPPEIEKK SCKISSPMSS HHHDEETQIS LRLGRSPSPD 120 RRQSRVIDDI NAAAAAKSTD EDDDEHNQTL KLGLDYGGDN KSTEPNLELS SGRQSPDNSA 180 SETKEEDAAA AGETWPPSKA LKATRSGDDE LSQPSVKRAR VSVRARCDTP TMNDGCQWRK 240 YGQKVAKGNP CPRAYYRCTV APSCPVRKQV QRCADDMSVL ITTYEGTHNH PLPVAATAMA 300 STTSAAASML LSGSTTSQTG LRSSPSPATN FFPGLNFSLP ADTSRTTRPL YFPNSSSPPF 360 PTITLDLTTS SNNVSSMFSS NVMKSTHRFP STNLNFSSSE SNISPAIWST GGYTNYSTIY 420 NRNNNNILGT SQPGKSSQEQ QFYGQAAAAA SQQALTETLT KAITSDPSLR SVIAAAITSM 480 VGNNAPMQHK RVKVNDEVIG THQAIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-21 | 232 | 293 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-21 | 232 | 293 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185444.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | A0A061EM50 | 1e-132 | A0A061EM50_THECC; WRKY DNA-binding protein 72, putative | ||||
STRING | EOY03394 | 1e-133 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 5e-72 | WRKY DNA-binding protein 72 |