PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000002.1_g00042.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 506aa    MW: 54606.6 Da    PI: 8.2712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000002.1_g00042.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30232291159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +v+++tYeg+Hnh+
  Itr_sc000002.1_g00042.1 232 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSVLITTYEGTHNHP 291
                              58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-32217293IPR003657WRKY domain
SuperFamilySSF1182901.57E-27225293IPR003657WRKY domain
PROSITE profilePS5081128.575227293IPR003657WRKY domain
SMARTSM007743.3E-37232292IPR003657WRKY domain
PfamPF031065.4E-27233291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MADSLDISGD GAAKQKAGDT LAGRQEGFMK AVLKKDEGRA AATVKAEMKE VKEENARLKT  60
LLAKIEKDYS SLQMRFFDVF SHQPPEIEKK SCKISSPMSS HHHDEETQIS LRLGRSPSPD  120
RRQSRVIDDI NAAAAAKSTD EDDDEHNQTL KLGLDYGGDN KSTEPNLELS SGRQSPDNSA  180
SETKEEDAAA AGETWPPSKA LKATRSGDDE LSQPSVKRAR VSVRARCDTP TMNDGCQWRK  240
YGQKVAKGNP CPRAYYRCTV APSCPVRKQV QRCADDMSVL ITTYEGTHNH PLPVAATAMA  300
STTSAAASML LSGSTTSQTG LRSSPSPATN FFPGLNFSLP ADTSRTTRPL YFPNSSSPPF  360
PTITLDLTTS SNNVSSMFSS NVMKSTHRFP STNLNFSSSE SNISPAIWST GGYTNYSTIY  420
NRNNNNILGT SQPGKSSQEQ QFYGQAAAAA SQQALTETLT KAITSDPSLR SVIAAAITSM  480
VGNNAPMQHK RVKVNDEVIG THQAIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212322931777Probable WRKY transcription factor 4
2lex_A1e-212322931777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185444.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A061EM501e-132A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
STRINGEOY033941e-133(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-72WRKY DNA-binding protein 72