PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_32_00062
Common NameCHLNCDRAFT_141224
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 626aa    MW: 65037.5 Da    PI: 7.0093
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_32_00062genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.7e-14256307154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54 
                      s+y+GV++d+k+ +W+++I++        +  +s+g+f+t+e Aa+a+++a+  l 
  IGS.gm_32_00062 256 SRYRGVSYDRKKAKWRVQIKV----AalGKSGVSVGYFDTEEAAARAYDRAAIGLL 307
                      79*******************....44446*********************98766 PP
2AP226.12.2e-08363412155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++ GV    ++++W A+I +       k  +lg++ t+eeAak +++  ++l+g
  IGS.gm_32_00062 363 SRFMGVGSSNRKNQWQARILVH-----GKVTHLGYYETEEEAAKVYDKVSLALHG 412
                      678899777789*********4.....4********************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-9256304IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-11256318IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-11257319IPR001471AP2/ERF domain
SMARTSM003801.0E-6257325IPR001471AP2/ERF domain
PROSITE profilePS5103214.75257319IPR001471AP2/ERF domain
PROSITE profilePS5103212.115364420IPR001471AP2/ERF domain
SMARTSM003809.1E-5364426IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-11364422IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-9365421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MQGAHQAHQQ QQQQYPMSSA ELWDAVQRQQ AAQQGGAQYG MMHGGGAMAP LPSYEMAPAA  60
GAGPQPLVLP GKPLPSGTSF YPQQHGASGG ITGVPSSLTS LPGVPYSTTP SPPPGVGAQP  120
QLYGGGSPSL GVQGAPGGYP QLSGLSSQLS SGMVLGGMAP GAHLVPNQHL GHPGGPSLMR  180
GQQQQAAALS VPVPVPINTQ PLVKMDPEET GHPSSSHSVV ALPLPIPGSP GSDDEGEGDG  240
DGSPTDCMGS GGLNKSRYRG VSYDRKKAKW RVQIKVAALG KSGVSVGYFD TEEAAARAYD  300
RAAIGLLGRD NPNLQTNFDA RDYTGETIPP LTGKTREEVK TTLKSERIKQ APRRRFTSRQ  360
RTSRFMGVGS SNRKNQWQAR ILVHGKVTHL GYYETEEEAA KVYDKVSLAL HGDNAQTNFA  420
ASNYGAQEVA AYSGLDREDL QRALGLLDFI KDMPDVAPAL GGGGGGARGG AGMFKSRSMG  480
NLMDLSAPFF DEEDEALAAM EYVRPRKMSK SMSLTQLAAL ENNGGGGAGA GAQAGRPPLA  540
PAGGSGNQQL GPLGKPIRRT NTFSSSLAVL QEADREGRAA DDHHLTHGGL SSHHSSGDDL  600
VQRLLAPPTG NAEDDAMLSE LLAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254266KSRYRGVSYDRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843388.10.0hypothetical protein CHLNCDRAFT_141224
TrEMBLE1ZSD20.0E1ZSD2_CHLVA; Uncharacterized protein
STRINGXP_005843388.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP624466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-12AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]