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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | TCP | ||||||||
Protein Properties | Length: 268aa MW: 28837.3 Da PI: 6.6395 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 37.2 | 1.1e-11 | 2 | 64 | 48 | 89 |
TCP 48 ieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....................k 89 ieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ + Han005532 2 IEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaahqfhgalalahhpfE 64 9**********************9998888888888855555555555555444444433331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 10.626 | 1 | 16 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.7E-13 | 2 | 115 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
XIEWLLQQAE PAIIAATGTG TIPANFSTLN VSLRSSGSTL SAPPSKSAAH QFHGALALAH 60 HPFEEGFSQM LGFHHHQHHQ NPNILTADQL ADAISTGGDS TENFMRKRYR EDLFKDESNQ 120 NQGDGSQSPS NKSFKSGMEM GKPQEPGPSS GNNILRHHGS MMPATAMWAV APAPTTATGN 180 TLWMLPVSTS VTNSSSGPES QHQHQHQQQM WPFPTAQALG GGNTYKHHCI SSENQHPGGD 240 LDSNRIENNP LHSGLCNEPQ HSSNTPSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021988457.1 | 1e-137 | transcription factor TCP8 | ||||
Refseq | XP_021988458.1 | 1e-137 | transcription factor TCP8 | ||||
TrEMBL | A0A251TJU9 | 1e-136 | A0A251TJU9_HELAN; Putative TCP family transcription factor | ||||
STRING | EOX97160 | 1e-66 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-40 | TCP family protein |