PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Han003249

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

ERF

Protein Properties

Length: 211aa MW: 23583.5 Da PI: 7.6658

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32092405	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-60704	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.9e-18	46	96	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aaka++ a+++++g Han003249 46 PVFRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSTAEMAAKAHDVAALSIKG 96 579**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.9E-12	46	96	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.484	47	104	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-20	47	104	IPR016177	DNA-binding domain
SMART	SM00380	6.3E-36	47	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.2E-31	47	105	IPR001471	AP2/ERF domain
CDD	cd00018	8.93E-31	48	106	No hit	No description
PRINTS	PR00367	3.2E-10	48	59	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-10	70	86	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAAISRKPDV QTVPATPHKG VVDDQPVPEN SKNKKRNRKD VSYKHPVFRG VRMRSWGKWV 60 SEIRQPRKKS RIWLGTFSTA EMAAKAHDVA ALSIKGNSAI LNFPELKDSL PRPVSLSPRH 120 VQEAAAKAAS MLEFARTPTP PTQPPLTESN PVDELGEITE LPSLDGNELV KVDSVDQWVY 180 PSWEVADIDG FLEYVSYXMA DNYNTQLILD C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-19	39	104	6	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022010000.1	1e-153	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	8e-54	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A251VCS1	1e-151	A0A251VCS1_HELAN; Putative DNA-binding domain-containing protein
STRING	Gorai.003G063500.1	5e-57	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-56	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]