![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Han001067 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||||||
Family | TCP | ||||||||||||
Protein Properties | Length: 346aa MW: 36452.5 Da PI: 5.6018 | ||||||||||||
Description | TCP family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.7 | 3e-36 | 85 | 189 | 3 | 95 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec............eaesssssasnsssgka 90 + +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++s++++++ ++ ++a Han001067 85 VPRRTSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVnvngtlkipttpSNGSEEQEGGVKRRKRA 184 567899*********************************************************7777733321111221111222333333333333344 PP TCP 91 aksaa 95 ++s+ Han001067 185 CNSEF 189 44433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-29 | 89 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.512 | 90 | 144 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
SVTHVGSVSL TGTNNNDSDY DDDVSHTGIL SASDPLLRDP SAYTITPVHH SPPVTEPFKQ 60 EPPENETPLP IVPMTSSNHQ LTVAVPRRTS KDRHTKVEGR GRRIRMPATC AARIFQLTRE 120 LGHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVNVNGT LKIPTTPSNG SEEQEGGVKR 180 RKRACNSEFY DVNDDSAGSN VTNFSNFAPV APIAPTGLVP VWTMGGPVNA GGGFFVIPQS 240 GAVGSASAQP QLWAIPAGAT TVFNMAARPI SSFVSAMQPA GGSGAEPSNS GEEKLGTVST 300 AMAPSSSSVT TAATAQAQML RDFSLEVYDK RELQFMTDDN PSKTSS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022012536.1 | 0.0 | transcription factor TCP19-like | ||||
Swissprot | Q9LT89 | 2e-69 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A251SE71 | 0.0 | A0A251SE71_HELAN; Putative TCP family transcription factor | ||||
STRING | XP_009623553.1 | 1e-99 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51910.2 | 2e-70 | TCP family protein |