PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001067
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family TCP
Protein Properties Length: 346aa    MW: 36452.5 Da    PI: 5.6018
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32085338PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-23557PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.73e-3685189395
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec............eaesssssasnsssgka 90 
                + +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++            +++s++++++ ++ ++a
  Han001067  85 VPRRTSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVnvngtlkipttpSNGSEEQEGGVKRRKRA 184
                567899*********************************************************7777733321111221111222333333333333344 PP

        TCP  91 aksaa 95 
                ++s+ 
  Han001067 185 CNSEF 189
                44433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2989164IPR005333Transcription factor, TCP
PROSITE profilePS5136927.51290144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
SVTHVGSVSL TGTNNNDSDY DDDVSHTGIL SASDPLLRDP SAYTITPVHH SPPVTEPFKQ  60
EPPENETPLP IVPMTSSNHQ LTVAVPRRTS KDRHTKVEGR GRRIRMPATC AARIFQLTRE  120
LGHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVNVNGT LKIPTTPSNG SEEQEGGVKR  180
RKRACNSEFY DVNDDSAGSN VTNFSNFAPV APIAPTGLVP VWTMGGPVNA GGGFFVIPQS  240
GAVGSASAQP QLWAIPAGAT TVFNMAARPI SSFVSAMQPA GGSGAEPSNS GEEKLGTVST  300
AMAPSSSSVT TAATAQAQML RDFSLEVYDK RELQFMTDDN PSKTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022012536.10.0transcription factor TCP19-like
SwissprotQ9LT892e-69TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A251SE710.0A0A251SE71_HELAN; Putative TCP family transcription factor
STRINGXP_009623553.11e-99(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-70TCP family protein