PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046733.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 727aa    MW: 82206.8 Da    PI: 6.312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046733.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.11.4e-5661331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk gyWkatg
  HL.SW.v1.0.G046733.1   6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWKATG 93 
                           79****************************.99***************6434555777******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  HL.SW.v1.0.G046733.1  94 KDRKVNS-QTRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                           *******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-644156IPR003441NAC domain
PROSITE profilePS5100562.1416156IPR003441NAC domain
PfamPF023654.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI PSGLQDAYAL CRVFKKSAVG PKIGEQYYAS TSTSTNHINQ  180
NHHSHNQHNN RHISMTSDHS SSIEIYSDGR CEDFESNNYP MVPADTCSAQ TSMMQRCRPD  240
HHPHNKWTHF LSDDDSFNYN FSTTPNSSFQ NYGGISYPPS KVDVALECAR LQHRLTLPPL  300
EVEDFPHSSG NINEFKVMQS SGHHHHAMPE TGANDTDILQ EILSVAHVSQ ELINQPSSNF  360
MDETSMWGST NVNIIGTAAD DFSFMVGRDT QYNQSLDNND MNPMRYMDKS WENHLARSIE  420
IGDFEEGFKS DQRAVENLRW VGMSSKDVEE SFVEEHKIVP FENISSYRRE EHEDINGHQS  480
SCNNKEFNED TDQTNDQFSL GFINSGPNEH LIDEGNMDEY SSSPSFEVVE EIKVNHGLFV  540
STRQVAETFF HQSVPSQTVQ VHLNPVLLLS NHFLVGPKAT ASNSGKKSEN STHDHDQHSF  600
ISVTTVFKAM FVEMTKSMKL AWWTIMSTIM CMISFISTSV EQVVAAASAT SAGVEGNENG  660
CDILVLKQRM KRGIGAKLCN EKGKVSVVNI RGANNLTVFL KKIGVFITIT LALCTMWANH  720
NLIITT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-58116215174NAC domain-containing protein 19
3swm_B6e-58116215174NAC domain-containing protein 19
3swm_C6e-58116215174NAC domain-containing protein 19
3swm_D6e-58116215174NAC domain-containing protein 19
3swp_A6e-58116215174NAC domain-containing protein 19
3swp_B6e-58116215174NAC domain-containing protein 19
3swp_C6e-58116215174NAC domain-containing protein 19
3swp_D6e-58116215174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343143.20.0NAC domain-containing protein 45-like isoform X2
TrEMBLA0A2P5FJ370.0A0A2P5FJ37_TREOI; NAC domain containing protein
STRINGXP_008343142.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-168NAC domain containing protein 28