PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G046276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 464aa MW: 50865.7 Da PI: 7.2402 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 61 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g HL.SW.v1.0.G046276.1 61 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 110 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-33 | 61 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-11 | 61 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 61 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-29 | 61 | 117 | No hit | No description |
SuperFamily | SSF54171 | 4.97E-21 | 61 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 61 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEEAFTRLDG TSSTGLTPTN LSTESDQPHN KKYATATATA TATAKRSLRE SAGASSGGTM 60 RYRGVRRRPW GRYAAEIRDP QSKERRWLGT FDTAEEAACA YDCAARAMRG LKARTNFVYP 120 SSPPPPPLSS DHHHHHHPLY TPPFNFAKHS QASIKSQLMG CGTTVPPNPH QFPSNWSRFP 180 HSSNPNVDFS GSTVVPQRNG NNSTSSTSSS SSMNMQMFLR DHFNSSLNNN MVSPAHQSTL 240 YNQFPYMNNN NGSSSSSSSA SSSSSSCYST LTTTSFSGYP MVNSEISSSM PNNCTKTTTA 300 HQEVFDHEPE SFFPKEESDS GLLEEVIQRF FPKSSSKKYN YTDSLPKYLE SSTNSSVNPL 360 MSCENSSTIL SVSQTTGIKT DQNNFMGCYS SDYQSPSNIN VPLQQLGCLN NTAVVSSQTV 420 PFNNHDAAMN FHQFGQDQSM FMDDIFQFPE LVSAFAARAL QNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 53 | 117 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5FMM9 | 1e-120 | A0A2P5FMM9_TREOI; AP2/ERF transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-12 | DORNROSCHEN-like |