PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045850.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 574aa    MW: 64718.1 Da    PI: 9.6191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045850.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.8e-19161246185
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f   + ps v+ ++ l++p  fa+++ ++k++  +++l+ ++gr+W+vk+++   +++s++++++ GWk F+++n+L++ D++ F l 
  HL.SW.v1.0.G045850.1 161 FMVSMRPSFVGDKAYLIIPSMFANNYLLNKHQ--DVILKVQDGRTWSVKYSIrqyKGSSSKTTFECGWKAFAQDNKLRVDDVCAFVLR 246
                           667788999**************999999666..79**************77555777777************************874 PP
2B339.51e-12476567299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           f+v ++s++   + l +p  f++++ ++  +s+t+tl     +   vkl    ++  y +++GW  F+ +n L+ +D+++F+l++r++ 
  HL.SW.v1.0.G045850.1 476 FQVVLQSNHAYGNKLPIPIAFVRQYLEE--KSQTMTLWV-GEKYRHVKL--LAGP-PYAFSAGWAAFATDNSLQPRDVCIFELIKRNQP 558
                           45556788888888***********645..455666555.445556677..4444.599****************************** PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                           e++v++fr+
  HL.SW.v1.0.G045850.1 559 EMKVTIFRQ 567
                           *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-24154263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-22156263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-21159260No hitNo description
PROSITE profilePS5086314.297161262IPR003340B3 DNA binding domain
SMARTSM010197.6E-9161257IPR003340B3 DNA binding domain
PfamPF023628.4E-16161246IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-11285373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14286365IPR015300DNA-binding pseudobarrel domain
CDDcd100176.57E-12290375No hitNo description
SMARTSM010194.7E-4292377IPR003340B3 DNA binding domain
PROSITE profilePS508638.586340377IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-17471568IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-18471568IPR015300DNA-binding pseudobarrel domain
CDDcd100179.12E-16475566No hitNo description
PROSITE profilePS5086310.856475568IPR003340B3 DNA binding domain
SMARTSM010197.5E-6475568IPR003340B3 DNA binding domain
PfamPF023621.8E-10476567IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MHKGKQIPKT FWMKYCGSLS SQVILKLPCG SRWELGLTKS DGKIWIEKGN SMFNVIIFDK  60
STAEIDYPSN PNHFEKHGID IIQSHSHVGN KDDVSIEVLG SYPKTRDKSP LQCPQPHKKR  120
KTSSCGKSKV KFDIPDQRLS AKEKAEALQR AKGFKSKDPF FMVSMRPSFV GDKAYLIIPS  180
MFANNYLLNK HQDVILKVQD GRTWSVKYSI RQYKGSSSKT TFECGWKAFA QDNKLRVDDV  240
CAFVLRSSIG IILFEVVIFC ENGVAKSPML LELAYTTAIE GASCSQSERP SFTVTMHETY  300
ATGHSNLYLP YKFVEKYINK NECEVRQANG FRRAELLCCG WKAFMLDNSL RKGDICTFEL  360
TNNGNEISFR VTFVKGAADD AYNKQVATKR RATTNPCVKV ESSFNYGEAS MISQNQMAKK  420
EQENIKVEPF DKSMKVISEA NTGNQGTANK RPSSSGLCSR GASEAANQFF TKNPYFQVVL  480
QSNHAYGNKL PIPIAFVRQY LEEKSQTMTL WVGEKYRHVK LLAGPPYAFS AGWAAFATDN  540
SLQPRDVCIF ELIKRNQPEM KVTIFRQSDL VQD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FXY33e-99A0A2P5FXY3_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein