PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

ERF

Protein Properties

Length: 301aa MW: 32822.8 Da PI: 4.5611

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045355.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	104	153	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g HL.SW.v1.0.G045355.1 104 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 153 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-12	104	153	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-21	104	162	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.9E-32	104	162	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.288	104	161	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-37	104	167	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-10	105	116	IPR001471	AP2/ERF domain
CDD	cd00018	8.55E-33	105	163	No hit	No description
PRINTS	PR00367	2.6E-10	127	143	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAKEINIESD AQENLLGTTT ITTTTTTSSS SSSYSCSFES SSELSAGLYQ KYTKNADQDC 60 TIQNGTTKEV EGMKNGNNGS NEQQSKKRPR SSENGTNEEN KHPTYRGVRM RNWGKWVSEI 120 REPRKKSRIW LGTYPTAEMA ARAHDVAALA IKGASAYLNF PELRNDLPRP VSTTPKDIQA 180 AAAKAAAAFE GAKLLPCVTI DHDTHEAEAE AEAEAEPSRT QIPTSFSTTL SSTTTENGNT 240 QESTSSPSSA DNYEDTLFDL PDLFIGGTDS GTEFCYYSSS WHLCAADTGL RLEEPFLWEY 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-17	93	165	3	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887656.1	2e-96	ethylene-responsive transcription factor ERF034
Swissprot	Q8LBQ7	4e-72	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2P5EJ48	1e-134	A0A2P5EJ48_TREOI; AP2/ERF domain containing protein
STRING	XP_008232393.1	2e-93	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-65	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]