PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045277.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 265aa    MW: 28069.1 Da    PI: 5.1376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045277.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-1675124256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g+
  HL.SW.v1.0.G045277.1  75 FFRGIR-CR-SGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDVAALALKGH 124
                           69***9.55.6*********843...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.82366131IPR001471AP2/ERF domain
SMARTSM003801.2E-2675137IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1776132IPR016177DNA-binding domain
PfamPF008471.0E-976124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2576132IPR001471AP2/ERF domain
CDDcd000181.58E-1476133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MANPPTDVPK TDQPPNPSIS LVFSQSEVRP ISENQPPSPA VAEAVAGLIP SEDPPPHNPF  60
HSPRTGSSSV RKHPFFRGIR CRSGKWVSEI REPRKTTRVW LGTYPTPEMA AAAYDVAALA  120
LKGHDTALNF PNLASSYPVP ASTSATDIRA AAAKAAESKH HQQQAELKPK LKENKDGGDQ  180
SLKSVPGWVV NEESCSSGAN NNSELSSGGD GGSEFMDEEA LLNMPNLLVN MAEGMLVSPP  240
RINTPSSDDS AGNSDGGECL WSYT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081410.13e-63PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ902e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2P5D9E52e-88A0A2P5D9E5_PARAD; AP2/ERF domain containing protein
STRINGVIT_16s0100g00400.t011e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-44ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]