PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044625.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 330aa    MW: 36005.1 Da    PI: 6.7448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044625.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182070256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                          ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  HL.SW.v1.0.G044625.1 20 KFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 70
                          799******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-181977No hitNo description
SuperFamilySSF541713.6E-202078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-292077IPR001471AP2/ERF domain
SMARTSM003801.7E-362083IPR001471AP2/ERF domain
PfamPF008471.5E-122069IPR001471AP2/ERF domain
PROSITE profilePS5103220.3762077IPR001471AP2/ERF domain
PRINTSPR003671.0E-72132IPR001471AP2/ERF domain
PRINTSPR003671.0E-74359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVTTGLRRKS SSSTTRGHQK FVGVRQRPSG RWVAEIKDSL QKVRLWLGTF DTAEDAARAY  60
DDAARALRGA NARTNFQLPA SSSNQDDQDH NNLEPFSFEQ VCAPTSSAAS EGLLGALKAK  120
LLDSNGEAKP TTKAAALLFP FTAKPPHQNQ YMMSNNVNTA DDQLSVVLDD HNHGLAGHGG  180
QQGHDQLHGD HNSSWSGVWS SNKPPPSTIV SSHSTDNNTT HHVKATSSSS DHHHHASNLS  240
SSPSVLSINN NNNLSIDSEE EMMMMVQYPS AITYDKNDIH HHHQHQEQQF DDAATFFGGS  300
NSINSTSTSS SWDSLSFLYH SPKFYSKLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1518761271Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5F5E63e-60A0A2P5F5E6_TREOI; AP2/ERF domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11