PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044525.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CPP
Protein Properties Length: 544aa    MW: 59610.1 Da    PI: 7.8128
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044525.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53e-14150188241
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           ++k+C+Ck+skClk+YCeCfaag +C+  C+C +C+N+ +
  HL.SW.v1.0.G044525.1 150 KQKQCKCKNSKCLKMYCECFAAGIYCDG-CNCVNCHNNMD 188
                           89**************************.********976 PP
2TCR50.83.2e-16234272139
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           k++kgCnC+ks ClkkYCeCf+a+  Cse+CkC+dCkN 
  HL.SW.v1.0.G044525.1 234 KHNKGCNCRKSGCLKKYCECFQANILCSENCKCSDCKNF 272
                           589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.8E-17149189IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.944150274IPR005172CRC domain
PfamPF036383.0E-11151186IPR005172CRC domain
SMARTSM011141.1E-18234275IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12237272IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MLKDLFMDQS ETISDFPPKK LARQLDFTTA CRPLANVVVQ EKLEPLLLVQ SQPPQTQSQP  60
SSASSSSPAQ LHMQLQLKSQ GQTVPSPPQA QSQREAQSPL HARPNQASTS HHRIPHLLNK  120
LPLHTTSPSV KQESPKSRPW IEAKDGTPKK QKQCKCKNSK CLKMYCECFA AGIYCDGCNC  180
VNCHNNMDND AARKEAIGSV LERNPNAFKP KIYSSPRESK DGKEEVGDNQ PAGKHNKGCN  240
CRKSGCLKKY CECFQANILC SENCKCSDCK NFDGSEERRA LFHENHSAVY RQQAANAAIN  300
GAIGSSGYGT PLISRKRKGD ELFFGVIGKD QSIHMNGRGQ LANHPTTSVP SSVAPVPVRR  360
NTSGSSKLAY RSPLADVLQE EDVKDLCTLL VVASGEAART FAENRPTESG SKTLIASSTL  420
RSEDCREEND VQPAGHEHLL EGKQADKDVT SDFRSDNCDM QNDEPMSPGT LALMCDEKDT  480
MFMAAGLPNG ETTQCGNIIR KSSSDNQCTE LYAEQESRIL TGFCSFLSRL ITRGSMKGEI  540
LYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-281422832132Protein lin-54 homolog
5fd3_B9e-281422832132Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023851.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A2P5G1M20.0A0A2P5G1M2_TREOI; Lin-54-like
STRINGXP_010100260.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-107Tesmin/TSO1-like CXC domain-containing protein