PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044249.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 373aa    MW: 42031 Da    PI: 5.4841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044249.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.2e-5381361128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatg
  HL.SW.v1.0.G044249.1   8 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATG 95 
                           79****************************.99**************95344555788******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v++++g+++  +ktLvfy grap g +tdW+mheyrl
  HL.SW.v1.0.G044249.1  96 KDRKVVCQSGSVTAYRKTLVFYCGRAPLGDRTDWIMHEYRL 136
                           ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-593167IPR003441NAC domain
PROSITE profilePS5100557.0288167IPR003441NAC domain
PfamPF023651.4E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MIMGGASLPP GFRFHPTDEE LVGYYLKRKV EGLEIELEVI PVIDLYKFDP WELPEKSFLP  60
KRDMEWFFFC PRDRKYPNGS RTNRATKAGY WKATGKDRKV VCQSGSVTAY RKTLVFYCGR  120
APLGDRTDWI MHEYRLSDDF TQGGPSFHKT DRCRLQGAYA LCRVVKKNEN GQKLNDCLGE  180
PKGKKIGSSS SHGDFTSARL ILNEPLGISG EASSHASYQH NESQYSSPIT SPNEVTRAAD  240
FEPSVTETNP ASFWVSPDLI LDSSKDYPQL QAAIPDYFGQ YECPSSVTPW QSYEHSEISP  300
SSSYSNLNGG IELSDNLNQI GCVSPYPGNT TYMDFYGNEV MEYEGCDNWD KASICRKFWG  360
DFAVVYECKK TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52717316171NO APICAL MERISTEM PROTEIN
1ut4_B3e-52717316171NO APICAL MERISTEM PROTEIN
1ut7_A3e-52717316171NO APICAL MERISTEM PROTEIN
1ut7_B3e-52717316171NO APICAL MERISTEM PROTEIN
4dul_A3e-52717316171NAC domain-containing protein 19
4dul_B3e-52717316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8748371e-127KF874837.1 Boehmeria nivea NAC domain-containing protein (NAC13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104346.20.0NAC domain-containing protein 71 isoform X2
SwissprotO496971e-101NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2P5C7B30.0A0A2P5C7B3_TREOI; NAC domain containing protein
STRINGXP_010104346.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-103NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]