PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YA

Protein Properties

Length: 346aa MW: 37624.3 Da PI: 7.1365

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043923.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.4	1e-32	175	231	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+RgsgGrF HL.SW.v1.0.G043923.1 175 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRARGSGGRF 231 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-36	173	234	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.78	174	234	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.7E-29	176	231	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-24	177	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	179	199	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-24	208	231	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MRSKSKNTDR LGLDSHAIPP SSVCGEPWWR NVSYMPAPMP LTGGNASNSS SVECPNGASE 60 SNEDQSLSNE GPYQEDDDAT KDSHVSASPQ SGNCGQEYQI MQHVSSTTPP VHGGCLTQPT 120 QLELVGHSIQ SCASNPYQDV YFGGMMAAYG HQPMGYPPFY GMPQARMPLP LEMAQEPVYV 180 NAKQYQGILR RRQARAKAEL EKKLIKSRKP YLHESRHQHA MRRARGSGGR FAKKTNDENS 240 SSCTEKERGS GLGQAHSSLS ACSSGSEPLV SDSNETWNSS NAQQEAYTGG HNYINTNGCF 300 QNHGGMQDTK YQLCPSERAE EGDCSGQQRG SLSSNQASHR RLAIQ*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MRSKSKNTDR LGLDSHAIPP SSVCGEPWWR NVSYMPAPMP LTGGNASNSS SVECPNGASE  60
SNEDQSLSNE GPYQEDDDAT KDSHVSASPQ SGNCGQEYQI MQHVSSTTPP VHGGCLTQPT  120
QLELVGHSIQ SCASNPYQDV YFGGMMAAYG HQPMGYPPFY GMPQARMPLP LEMAQEPVYV  180
NAKQYQGILR RRQARAKAEL EKKLIKSRKP YLHESRHQHA MRRARGSGGR FAKKTNDENS  240
SSCTEKERGS GLGQAHSSLS ACSSGSEPLV SDSNETWNSS NAQQEAYTGG HNYINTNGCF  300
QNHGGMQDTK YQLCPSERAE EGDCSGQQRG SLSSNQASHR RLAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-19	175	231	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102352.1	0.0	nuclear transcription factor Y subunit A-1
Refseq	XP_024025217.1	0.0	nuclear transcription factor Y subunit A-1
Refseq	XP_024025218.1	0.0	nuclear transcription factor Y subunit A-1
Refseq	XP_024025219.1	0.0	nuclear transcription factor Y subunit A-1
Swissprot	Q9LXV5	3e-79	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2P5EUE4	0.0	A0A2P5EUE4_TREOI; Nuclear transcription factor Y subunit A
STRING	XP_010102352.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	2e-80	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]