PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043472.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 392aa    MW: 43882.8 Da    PI: 7.3424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043472.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.27.4e-15317343127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +ktelC+ +++tG C+yGd C+FaHg+
  HL.SW.v1.0.G043472.1 317 FKTELCNKWQQTGACPYGDHCQFAHGM 343
                           79***********************95 PP
2zf-CCCH20.49.1e-07355380126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykte+Cr  +++  C+yG rC+F H+
  HL.SW.v1.0.G043472.1 355 YKTEICRMVLAGDRCPYGHRCHFRHS 380
                           9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18311349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-11313348IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-9316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929316344IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-12317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12350383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-9350385IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375354382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVPLKVRLKN YFSVLRSCFN MENEAYSPSS ETNTASPNSP RFAMAVGSAT HQNFTDISPE  60
TRDFGAEFFS MYRAIFQPQS PQIPSSLSLT PSTRSSSVGG DDDENATERR LNQARLILES  120
KELNNHYDLI QAHLQDLNKE VDFLRHENAE LRSINSELLK LISSPTAFRG FLLSSTNQSL  180
IESFRSLDIG GLSSNTTTTT NNTNDNHGLD DFSDISPTSV METNRFERRN PDQRVTLPKS  240
ISVRSTGYQK INPGLSREGP SRTSTKPRTP SQSVSGTQRV YVPGVSDSSG SSSSGIQKDE  300
RENLSGLELE VYNQGMFKTE LCNKWQQTGA CPYGDHCQFA HGMAELRPVI RHPRYKTEIC  360
RMVLAGDRCP YGHRCHFRHS LTEQERLMLP H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-203173831076Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108899.21e-149zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5BKC30.0A0A2P5BKC3_TREOI; Zinc finger, CCCH-type
STRINGXP_010108899.11e-156(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-70C3H family protein