PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043014.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YC

Protein Properties

Length: 143aa MW: 16360.8 Da PI: 8.5191

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043014.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.8	3.6e-16	7	90	14	96
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 ++ + e+P r+kki+k d+d+k++ aea l+s + elf+ l+ rs a e+kr+ +k i aav+r + + dfl+d HL.SW.v1.0.G043014.1 7 EETIRPEIPTGRVKKIMKLDKDIKKVNAEALFLISCSTELFLRFLAERSAEVAIEKKRKIVKLEHIRAAVKRHQpTSDFLLDSL 90 45556799*************************************************************976489**975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-19	5	77	IPR009072	Histone-fold
SuperFamily	SSF47113	2.18E-17	6	96	IPR009072	Histone-fold
Pfam	PF00808	4.6E-18	13	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MMDEEKEETI RPEIPTGRVK KIMKLDKDIK KVNAEALFLI SCSTELFLRF LAERSAEVAI 60 EKKRKIVKLE HIRAAVKRHQ PTSDFLLDSL HLPPQRSDNQ PSDRNHSRNV AEKLVPVGTR 120 RIDDFFSKSA NENEAPIEIN ES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026035.1	5e-67	DNA polymerase epsilon subunit C
TrEMBL	A0A2P5BPF7	9e-69	A0A2P5BPF7_PARAD; Nuclear transcription factor Y subunit C
TrEMBL	A0A2P5EBH0	1e-68	A0A2P5EBH0_TREOI; Nuclear transcription factor Y subunit C
STRING	POPTR_0001s13970.1	1e-60	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	3e-42	nuclear factor Y, subunit C13