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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G042776.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
ERF |
Protein Properties |
Length: 272aa MW: 29790.1 Da PI: 6.7814 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G042776.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g
HL.SW.v1.0.G042776.1 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
89****999.**********8.....334**********************98876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPAGKSSND LNNSETLVPD DDHDVDRHGG RDAAPLCPKA LSELLSIKLR KSCKDPSPSL 120 TCLRLDNDNS HIGVWQKRAG SRAGSDWVMR IELGRGQNKN TTTTTNPTAT TVAATTTTTS 180 SATTISDIDD QEWDQHVGTN NVDLLTKSTR VVLGSSKSCS EHDQLVAAAC SQNDEDKIAM 240 QMIEELLNWN YPISSASSSA DYIAPAQQFN I*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 8e-16 | 5 | 63 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-15 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF147140 | 3e-52 | EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA. |