PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042776.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 272aa    MW: 29790.1 Da    PI: 6.7814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042776.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-18655255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  HL.SW.v1.0.G042776.1  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                          89****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-32563IPR001471AP2/ERF domain
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SMARTSM003808.7E-39669IPR001471AP2/ERF domain
CDDcd000185.46E-22664No hitNo description
PfamPF008474.2E-11655IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-19664IPR016177DNA-binding domain
PRINTSPR003675.0E-10718IPR001471AP2/ERF domain
PRINTSPR003675.0E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPAGKSSND LNNSETLVPD DDHDVDRHGG RDAAPLCPKA LSELLSIKLR KSCKDPSPSL  120
TCLRLDNDNS HIGVWQKRAG SRAGSDWVMR IELGRGQNKN TTTTTNPTAT TVAATTTTTS  180
SATTISDIDD QEWDQHVGTN NVDLLTKSTR VVLGSSKSCS EHDQLVAAAC SQNDEDKIAM  240
QMIEELLNWN YPISSASSSA DYIAPAQQFN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-156631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471403e-52EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101265.15e-88ethylene-responsive transcription factor SHINE 2
TrEMBLA0A2P5ADV12e-99A0A2P5ADV1_PARAD; AP2/ERF transcription factor
TrEMBLA0A2P5E7972e-99A0A2P5E797_TREOI; AP2/ERF transcription factor
STRINGXP_010101265.12e-87(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.12e-61ERF family protein