PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G041845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 22468.5 Da PI: 5.1311 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 3 | 55 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++++q+++Le+ F+ ++++ e++ +LA++lg++ rqV vW+qN+Ra+++ HL.SW.v1.0.G041845.1 3 KRRLNEDQVRVLERDFNYDKKLESEHKHQLAEQLGIPARQVAVWYQNKRARWR 55 45799***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 106.5 | 2.1e-34 | 2 | 92 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krrl+++qv++LE+ F+ ++kLe+e+K++la++Lg+ +rqvavW+qn+RAR++t+ lE+d+++L++++d+ +e++rLe+ev+ Lr el+ HL.SW.v1.0.G041845.1 2 NKRRLNEDQVRVLERDFNYDKKLESEHKHQLAEQLGIPARQVAVWYQNKRARWRTQSLEVDCTTLQHRLDTALAEKRRLEREVRVLRGELD 92 69************************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.6E-11 | 1 | 61 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.115 | 1 | 57 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.54E-11 | 3 | 58 | No hit | No description |
SuperFamily | SSF46689 | 2.92E-15 | 3 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-15 | 3 | 55 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 4 | 60 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 32 | 55 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNKRRLNEDQ VRVLERDFNY DKKLESEHKH QLAEQLGIPA RQVAVWYQNK RARWRTQSLE 60 VDCTTLQHRL DTALAEKRRL EREVRVLRGE LDMARQALQL SNNNTNTIYY DNNIHNNNVV 120 SSYCTTTTTT TDQELEREQE GDGRSCSSFS DNPQYDKNVI NNYDDHHLDH DDDQVLQIDH 180 DFFSNLIDW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451774.1 | 4e-47 | homeobox-leucine zipper protein ATHB-52 | ||||
Refseq | XP_006464812.1 | 4e-47 | homeobox-leucine zipper protein ATHB-52 | ||||
Swissprot | Q9FN29 | 2e-29 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A067E2G9 | 1e-45 | A0A067E2G9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PUT7 | 9e-46 | A0A2H5PUT7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4WEM7 | 9e-46 | V4WEM7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464812.1 | 2e-46 | (Citrus sinensis) | ||||
STRING | XP_006451774.1 | 2e-46 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 6e-26 | homeobox protein 52 |