PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G041819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | B3 | ||||||||
Protein Properties | Length: 420aa MW: 47923.5 Da PI: 9.6604 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.2 | 1.4e-13 | 5 | 80 | 15 | 96 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +l++p +f++++ + s+ t++ ++g W+v l +k ++r+++ +GW++Fv+ g++ g ++F+++g+++f +v + HL.SW.v1.0.G041819.1 5 ILRIPDNFVKKFRDE--LSTVATITVPDGHIWRVGL--KKADNRIWFHDGWQDFVDRYGIRLGYLLIFRYEGNTTF--NVFI 80 689******999755..888999999**********..********************************998888..5544 PP | |||||||
2 | B3 | 56.5 | 5.2e-18 | 288 | 378 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+ egD++vF++ + +e HL.SW.v1.0.G041819.1 288 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTSDGRQWPVRCLYRGGR--AKLSQGWYEFSLENNFGEGDVCVFEMLKMKEVV 371 78899******************877743...5***************665555..66***********************88878888 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+vfr HL.SW.v1.0.G041819.1 372 LKVTVFR 378 9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.888 | 1 | 84 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-9 | 2 | 84 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-18 | 5 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-20 | 5 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-10 | 6 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.41E-16 | 6 | 82 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-23 | 277 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-23 | 278 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.07E-21 | 283 | 378 | No hit | No description |
SMART | SM01019 | 7.7E-16 | 285 | 380 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 285 | 380 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-16 | 288 | 378 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTVRILRIPD NFVKKFRDEL STVATITVPD GHIWRVGLKK ADNRIWFHDG WQDFVDRYGI 60 RLGYLLIFRY EGNTTFNVFI FNLTTSEINY QGNSMHSSQA IYNNRYQIFE EMEDDSDEIV 120 GFSSGRMATG PLKAKLLGER AEQMTQGKVF NPPSLQNLFN GSKLNCINWG NEGNLDPAKG 180 AGNFQAQNQL THGVGVQFNV MESKKSGGEV KMNNSEEELR RSKKAGRKKR KIDSNGQESP 240 IKHDETDMRF RFYESASARK RTVTAEERER AISSAKTFEP TNPFCRVVLR PSYLYRGCIM 300 YLPSCFAEKN LNGVSGFIKL QTSDGRQWPV RCLYRGGRAK LSQGWYEFSL ENNFGEGDVC 360 VFEMLKMKEV VLKVTVFRVL EDAGLLNHPS HHTVSRKNGV DKLKLYMAIP SQCETMSKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-71 | 251 | 381 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-71 | 251 | 381 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021268.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-129 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2P5BW72 | 0.0 | A0A2P5BW72_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-129 | B3 family protein |
Publications ? help Back to Top | |||
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