PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G041057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 145aa MW: 16818.3 Da PI: 10.0794 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+n +nrqvtfskRr+g++KKA ELSv Cd +v+v+i++ +gk+ye HL.SW.v1.0.G041057.1 9 KRIDNATNRQVTFSKRRKGLFKKADELSVVCDSQVSVLILAGSGKVYEH 57 79*********************************************97 PP | |||||||
2 | K-box | 73.3 | 7.2e-25 | 71 | 139 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 yq+++g + + +++e++q l+kLk+++++L+ ++R+++GedL++Ls++eL+ Le+++++s++ iR++K HL.SW.v1.0.G041057.1 71 YQATTGIDIWRSNYEKMQDYLKKLKERNRSLRMQIRQRMGEDLNDLSFEELHTLEEEMDTSVRVIRERK 139 78899999************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.371 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-31 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.72E-33 | 3 | 80 | No hit | No description |
Pfam | PF00319 | 1.2E-21 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-15 | 83 | 139 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.748 | 84 | 144 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVRGKIQIKR IDNATNRQVT FSKRRKGLFK KADELSVVCD SQVSVLILAG SGKVYEHNSG 60 STTTKQVIDQ YQATTGIDIW RSNYEKMQDY LKKLKERNRS LRMQIRQRMG EDLNDLSFEE 120 LHTLEEEMDT SVRVIRERKC LFGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-15 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6byy_B | 7e-15 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6byy_C | 7e-15 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6byy_D | 7e-15 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466510.1 | 5e-63 | PREDICTED: floral homeotic protein DEFICIENS isoform X1 | ||||
Refseq | XP_016903517.1 | 2e-63 | PREDICTED: floral homeotic protein DEFICIENS isoform X2 | ||||
Swissprot | E0CPH4 | 6e-60 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | A0A2P5BT64 | 3e-64 | A0A2P5BT64_PARAD; MADS-box transcription factor | ||||
STRING | XP_008466510.1 | 2e-62 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-54 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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