 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G040396.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
GATA |
| Protein Properties |
Length: 379aa MW: 41575.2 Da PI: 6.695 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G040396.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55 | 1.1e-17 | 266 | 300 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
HL.SW.v1.0.G040396.1 266 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 300
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MEAPELYINQ NNMTSSAAGG GGEHFAVEDL LDFSNEEDAI VTDVDGPYCE ISAFPGNSTD 60
SSTLRTTTAT AALDTSCNSS SFSGCEPNYL NDFGSRRFAE GGQFSSDLCV PYDDIAELEW 120
LSNFVEESFS SNDLQRLQLI SGIKVRTTTD VSSETAARNF QPEPNRHGTN PNIFFNSELM 180
SVPAKARSKR SRAPPCNWTS RLVLMSPTAS FNSLPPPESS QDVVVSAPPA PTGPTTTTMA 240
KKTVKGAPKK KDVSEVADSG GEGRKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL 300
VPEYRPAASP TFVLTKHSNS HRKVLELRRQ KEMVRSQHQP QFLHHHRQHH QSMMFDASNN 360
GEDYLIHQHV GPDFRQMI*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
