PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036986.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 321aa    MW: 35815.4 Da    PI: 8.1997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036986.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18112162256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  HL.SW.v1.0.G036986.1 112 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 162
                           59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-15111171No hitNo description
SuperFamilySSF541713.27E-22112169IPR016177DNA-binding domain
PROSITE profilePS5103223.235112169IPR001471AP2/ERF domain
SMARTSM003805.9E-35112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-31112170IPR001471AP2/ERF domain
PfamPF008471.3E-12113162IPR001471AP2/ERF domain
PRINTSPR003675.4E-10113124IPR001471AP2/ERF domain
PRINTSPR003675.4E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDRMLENHSP LLFNEGLDVR SCLSNLILTG GTNTIDSIFS HCCGTSSCST ATAGPVFEPL  60
GSSVYHRQRD LVQQLSSENK PNADVSRFFQ TNPVQDSVRM TTFMAVPFKK KLYRGVRQRH  120
WGKWVAEIRL PQNRMRVWLG TYETAEAAAY AYDRAAYKLR GEYARLNFPN LKDPRVLGFG  180
DWTKLNALKN SVDAKIQAIC QKVKKNKAKK SMMKKKNKTS NSAEHVQSGE DSKGSDSSKV  240
TTTFDSPSSS FSSLFFGDNL DQEMVSPAVS EDGFWKCENS PASFSTECPM SVAEDSMFED  300
CSLARIPSFD PELIWEVLAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21109169263ATERF1
3gcc_A4e-21109169263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086732.11e-119ethylene-responsive transcription factor ERF061
SwissprotQ9C7W26e-64ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2P5AZQ81e-151A0A2P5AZQ8_TREOI; AP2/ERF transcription factor
STRINGXP_010096822.11e-118(Morus notabilis)
STRINGXP_010113146.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.18e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]