PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035425.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 282aa    MW: 32292.2 Da    PI: 5.5388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035425.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W+ eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G035425.1 14 RGAWSSEEDNKLRAYVERYGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                          89******************99************************97 PP
2Myb_DNA-binding53.26.7e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ T+eE+ l+++++++ G++ W+ Ia++++ gRt++++k++w+++l
  HL.SW.v1.0.G035425.1  67 RGNYTAEEESLIIKLHQEQGKK-WSMIAAKLP-GRTDNEIKNHWHTHL 112
                           899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.862961IPR017930Myb domain
SuperFamilySSF466891.09E-2911108IPR009057Homeodomain-like
SMARTSM007176.3E-121363IPR001005SANT/Myb domain
PfamPF002499.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-221568IPR009057Homeodomain-like
CDDcd001672.52E-91661No hitNo description
PROSITE profilePS5129424.9962116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2569115IPR009057Homeodomain-like
CDDcd001673.15E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVRAPYIDKN GIKRGAWSSE EDNKLRAYVE RYGHWNWREL PKFAGLSRCG KSCRLRWMNY  60
LRPDVRRGNY TAEEESLIIK LHQEQGKKWS MIAAKLPGRT DNEIKNHWHT HLKKRAMTNN  120
THNPDDYDQN QSKSQHSSGY SSGCDDHNHH GESEAQSSIT TDLSPQILES SQYSSSSPNN  180
IETTSISSTA TVNSTTTEVA EDISNIHDVS KLEADSVIEE YYRGGSDFWT EPFVEDNNVL  240
STQHEYYWAT CFGDEANNIA SFYNLSLYND DQAMGNFLYQ Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141187110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095860.15e-89transcription factor MYB14
TrEMBLA0A2P5D0Z01e-114A0A2P5D0Z0_TREOI; GAMYB transcription factor
STRINGXP_010095860.12e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-57myb domain protein 14