PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 379aa MW: 41786.8 Da PI: 7.5215

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G034357.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.9e-32	203	258	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ HL.SW.v1.0.G034357.1 203 KQRRNWSPELHKRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 258 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.351	200	260	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-28	200	261	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.97E-18	201	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-27	203	258	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	205	256	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MQCSGMAFEK YIEALEVERK KIQVFQRELP LCLELVNQTI DRCKQQLSGT TTTEYVHGQS 60 ECSEQTSSEG HHVFEEFMPL KRSSSSDNDE EEEKEEQSPK RQTTEKDNKK KSDWLRSVQL 120 WNTTPDPVSS QKEELPKKAS VTEVKSNGGA FQPFQREKNV GKPNGTSSSA CTTPVASAPA 180 TSSNADGGSN KREEDKDGQN QRKQRRNWSP ELHKRFLNAL QQLGGSHAAT PKQIRELMKV 240 DGLTNDEVKS HLQKYRLHTR RPNPAIHNNG NAQTPQVVFV GGIWMQPSEY AATVGGSNDS 300 PNGAAANGVY APVAAPPQTA HHVAVHRQQM QNKHSSEHSH NNSEERGMSH SHSEGAVHSN 360 NSPSTSSSTH TTTTSPAF*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MQCSGMAFEK YIEALEVERK KIQVFQRELP LCLELVNQTI DRCKQQLSGT TTTEYVHGQS  60
ECSEQTSSEG HHVFEEFMPL KRSSSSDNDE EEEKEEQSPK RQTTEKDNKK KSDWLRSVQL  120
WNTTPDPVSS QKEELPKKAS VTEVKSNGGA FQPFQREKNV GKPNGTSSSA CTTPVASAPA  180
TSSNADGGSN KREEDKDGQN QRKQRRNWSP ELHKRFLNAL QQLGGSHAAT PKQIRELMKV  240
DGLTNDEVKS HLQKYRLHTR RPNPAIHNNG NAQTPQVVFV GGIWMQPSEY AATVGGSNDS  300
PNGAAANGVY APVAAPPQTA HHVAVHRQQM QNKHSSEHSH NNSEERGMSH SHSEGAVHSN  360
NSPSTSSSTH TTTTSPAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR751555	0.0	FR751555.1 Humulus lupulus mRNA for myb transcription factor (myb5 gene), cultivar Osvald's 72, clone 3366.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010109406.1	1e-147	transcription factor HHO3
Swissprot	Q9FPE8	3e-99	HHO3_ARATH; Transcription factor HHO3
TrEMBL	G7ZLA4	0.0	G7ZLA4_HUMLU; Myb transcription factor
STRING	XP_010109406.1	1e-146	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	7e-93	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]