PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033552.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 856aa    MW: 93422.1 Da    PI: 5.0259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033552.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-0975102127
                           --S---SGGGGTS.--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                           +kt+lC+ff+r    C++G++C++aHg+
  HL.SW.v1.0.G033552.1  75 WKTSLCSFFRRQSgSCSHGSTCRYAHGE 102
                           8********99777************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1371108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-673107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27274103IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-574102IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-775102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.2E-5175230IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000762.2E-4178214IPR000504RNA recognition motif domain
SuperFamilySSF549281.63E-5178221IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.496284855IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.65E-46286312IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.65E-46344475IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.65E-46523639IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1506.7E-63537639IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138477.2E-9583641IPR025714Methyltransferase domain
CDDcd024402.16E-6585639No hitNo description
Gene3DG3DSA:3.40.50.1506.7E-63739794IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.6E-7742790IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.65E-46742804IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300750782IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1506.7E-63830855IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.65E-46839855IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAASSTNEHP PTETLTSLTH SVSTDAHNSI KDHHQPQAQP SDAALTDETP PSEKRKREED  60
QEQDPGPNPL ASPLWKTSLC SFFRRQSGSC SHGSTCRYAH GEEELRQRPD STWDPTSEHA  120
KKVQKKSEDE EKPVASISNE VMMTETVGGD GDEDGDGVGD GLDPGLSKCL GIPFKSSKKK  180
KGMTVGFVSF ESVEQLKTAM EQLEGKSIGN KSIKIADVIP RSFEKNIKPT TAFPQNGQET  240
GKPAIYGDDG DISVTLNGVQ SVDGNEDNST PNGLVSTRRS VIDVVTPLAH MTYSDQLEQK  300
KMSNMQILKK LTRNARKACP NGVSLPEWIL KSREIGGLPC NLEGILPSPL VNGYRNKCEF  360
SVGYSLQEKI TVGFMLGNFR EGVTAVEEPI NCPNVSTIAC KYASIFQEFL QHSDLPVWNR  420
FKNTGFWRQL TVREGRRPET TADSENPEAN IAEVLLMVQV STMSFDDALV ASQFEKLARA  480
FSAGAAANSP SLPLTALVVQ DHQGISNVAP ADAPLRQLPL VKEPDVPEME ADKNLVEPRI  540
HDYISNLKFC ISPTAFFQVN SLAAEKLYSL AGDWAGLGPD TLLFDICCGT GTIGLTLAHR  600
VGMVVGVEMN ASAVSDAHRN AEINGIKNCR FVCAKAEDVM GSLLKEYMSA TQLQDEFQIS  660
EGDVEVSSIT EEKDILVDNA EDPERSSCHS SDNIQEPGES SSQELQNVII ASECLDRGPQ  720
EPDSQLQSNC PSENGNPLVQ RFKNVVAIVD PPRGGLHPTV IKVIRTNPLL RRLVYISCNP  780
ESLVANAIEL CTPSAEKIEK GNKNNRGWRN MSAAGLARHR AKSMPNSEPF RPVKSMAVDL  840
FPHTVHCEMV MLLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-17541646263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-17541651262376Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-17541646263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022563.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2P5BUZ00.0A0A2P5BUZ0_TREOI; (Uracil-5)-methyltransferase family
STRINGXP_008225575.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]