PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 465aa MW: 52903.2 Da PI: 6.7085 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.1 | 5.5e-14 | 3 | 49 | 39 | 87 |
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea HL.SW.v1.0.G028697.1 3 EEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49 69*****************************98..55667*******85 PP | |||||||
2 | trihelix | 59 | 1.2e-18 | 288 | 363 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W+++ev Li++r++m++r+++g ++ lWe++++k++ g+ers +Ck+kwe++n + k ++ e++++ ++ HL.SW.v1.0.G028697.1 288 WPESEVSRLIQFRTSMDSRFEQGGfPEEVLWEDIAAKLACLGYERSGLMCKDKWESINHYVKISNNKESSKKRKEN 363 *********************97637899*********************************99888877642222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.6E-9 | 3 | 50 | No hit | No description |
PROSITE profile | PS50090 | 6.957 | 280 | 345 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.66E-20 | 286 | 352 | No hit | No description |
Pfam | PF13837 | 7.2E-13 | 287 | 360 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGDTSNHQVS 60 SSSLPEAHFV GNNLRFPTLN TPTSQANNNQ LLDQGPYQSH LNKHTCDSLS LSNSSEFESS 120 SSDDNNDFSN AGLVMADNDS SEKMMVMMRR NKKRSGSGGS RWKVKIKEFI DSQMRKLMEK 180 QDTWLEKLMR TLEQKEKERS LREEEWRKQE SARIDREHKF WAKERAWIEA RDAALMDALH 240 KLTGKEVHYK VSSPEEGLML AAAAAAAGEN NVPVDEGESE TQNRDETWPE SEVSRLIQFR 300 TSMDSRFEQG GFPEEVLWED IAAKLACLGY ERSGLMCKDK WESINHYVKI SNNKESSKKR 360 KENSRSSSGN YFQNNTTTTN ENSATTANNN NNNNSLYNHG EVYSCDQMSD HQGAGQTTAR 420 LPVNDGSSPS NANVHDSCFP FLMGEGDNLW ENYGLKLSKG GQNQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRNKKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229596 | 7e-51 | KP229596.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB40) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024923498.1 | 1e-176 | trihelix transcription factor PTL | ||||
TrEMBL | A0A2P5AIL3 | 0.0 | A0A2P5AIL3_PARAD; GAMYB transcription factor | ||||
STRING | GLYMA03G34960.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 3e-59 | Trihelix family protein |