PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027746.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 1747aa MW: 190590 Da PI: 5.6464

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027746.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4e-10	1016	1056	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +v+av+ +G + +++I++++ R++ qck ++ HL.SW.v1.0.G027746.1 1016 DWTDEEKSFFVQAVTSYGRD-FSKISQCVR-SRSRDQCKVFFS 1056 5***************77.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.33E-12	783	844	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-4	792	844	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.024	795	846	IPR017884	SANT domain
SMART	SM00717	6.6E-6	796	844	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	10.664	1012	1063	IPR017884	SANT domain
SMART	SM00717	3.3E-8	1013	1061	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-10	1014	1063	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	1016	1056	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-6	1016	1057	IPR009057	Homeodomain-like
CDD	cd00167	1.07E-6	1017	1055	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1747 aa Download sequence Send to blast
MPPEPLPWDR KDFFRERKHE RSESLGSVAR WRDSSHHGSR ELNRWGSADF RRPLGHGKQG 60 GWHFFSEVSG HGYASRSSEK VLEDDGCRPS NSRGEGKYGR SSRENRGSYN QREWRGHSWE 120 TNNGFSNTPG RVHDVNNEQK SREDLPSYSS HSNGGFGNTW DQVQFKDQHD KTGGSMGLGT 180 GQRCDREHSL GLNDWKPMKW TRSGSLSSRG SGFSHLSSSK SAGAIDSIDA KVESQTKNAT 240 PVQSPSADAN ACVTSAAPLE ETTSRKKPRL GWGEGLAKYE KKKVEGPEVT FNRGGAFTVS 300 NAEPSHSLSS SLIDKSPRVT SFSDCASPAT PSSVACSSSP GVEEKSFGKA VSIDNDSSNL 360 CGSPGPVSHN HSEGFSFNLE KMDSNSISTL GSSLVELLQS DDPNSMDSTY VRSTAINKLL 420 VWKAEISKTL EVTETEIDSL ENELKSLKSI AVGSSPSASS SLPAEDHLKS SEEGVITHLI 480 PRPAPLQIRS SGDAVVEKLP ISNGDQEEAC ANVKAEDVDS PGTVTSKFVE LLSLAKAVSS 540 SDMLNHAAGN LDHIPLTNKE VQHSVLGSGG EETVPGTCGD CSMLTEGELT APITDTLGSC 600 TDGEVKLHSV ILSSNKELAK GAHDIFNKLL PQDDFNLDSS EGCNAASRQD YALVREKFVM 660 RRQFIKFKER VITLKFRAFQ SLWKEDMHLL SIRKHRAKSQ KKSDLSLRSV HNGYQKHRSS 720 IRSRFSSPAG NLSLVPTAEV VDFTGKLLLD SQIKLYRNNL KMPALILDKK EKIVSRFISN 780 NGLVEDPCVV EKERAMINPW APAEKEIFMD KLATCGKDFK KIASFLDHKT TADCVEFYYK 840 NHKSDSFEKK KKLDCGKQVK SLANATYLRL NKKWNREMNA ASLDILDVAS VMAANADDNM 900 RNRKTCSGRS ILGGLSESKA SWGDDGTDER SSSFDIIGND RETFAADVLA GICGSLSSEA 960 MSSCITSSVD PGEGYREWRS QKVDSVVRRP LTPDVTQHVD DGTCSDESCG EMDPTDWTDE 1020 EKSFFVQAVT SYGRDFSKIS QCVRSRSRDQ CKVFFSKARK CLGLDVIHPG TGNERTFTGD 1080 DANGSGSGSE NVSAREMGSG ICSDKSGSKR DEDLPLSAMK MNNDETDPAE NFTSQTALSR 1140 SEGKNEKEQL NSKRNIGASE SQVSDPCPTQ SRPNLVSDGD STITQSVGET KILPIEERNS 1200 VLAGIETERK DGDEQGTSVA ESVSVCEGNE NDKLLIAESM IGMKPVDEVS SDELGNQTDG 1260 QDEKCNASTS GQSGLDSVVQ DSNSIGNASQ MASDRNSCSG FSLNPDYQRQ VSIELNSKEK 1320 SCVISLSQET PLVSANSMSL DSDVIQCEKN GNEDKISSSL DFQESRDVCH ISVCKDESNE 1380 HVTGLPLLTN AQSSQVLRAY PLQMQVKKEV NGGVMCINSS EVQSLSSSET SNNAPLSQNC 1440 YLQRCSNLNT PCSMTEFPLM SQNIEQAIDG QKSRSQSLSD SEKPSRSGGD VKLFGKILTT 1500 PSLLKADSNY WENEEKEGSN NHKLSNQSNL KFSNLHNSDG NSTLLKFDRK NYLGIENVQM 1560 RSYSYWDGNR LQATFPSVPD SAILLAKYPA AFSNFSAPSS TVEQQSLQSV VNSNELDVNG 1620 VSAYPTRETS NSNGMVDYQV YRSREAAKVQ PFTVDVKQRQ DMFSEVQRRN GIETISSFQH 1680 QGRGMVGINV LGRGGIVVGG ACTTGVSDPV AALKMHFAKT EQQYGGQSSS IIREDESWRG 1740 NGDMGR*

Sequence ? help Back to Top

Protein Sequence Length: 1747 aa Download sequence Send to blast

MPPEPLPWDR KDFFRERKHE RSESLGSVAR WRDSSHHGSR ELNRWGSADF RRPLGHGKQG  60
GWHFFSEVSG HGYASRSSEK VLEDDGCRPS NSRGEGKYGR SSRENRGSYN QREWRGHSWE  120
TNNGFSNTPG RVHDVNNEQK SREDLPSYSS HSNGGFGNTW DQVQFKDQHD KTGGSMGLGT  180
GQRCDREHSL GLNDWKPMKW TRSGSLSSRG SGFSHLSSSK SAGAIDSIDA KVESQTKNAT  240
PVQSPSADAN ACVTSAAPLE ETTSRKKPRL GWGEGLAKYE KKKVEGPEVT FNRGGAFTVS  300
NAEPSHSLSS SLIDKSPRVT SFSDCASPAT PSSVACSSSP GVEEKSFGKA VSIDNDSSNL  360
CGSPGPVSHN HSEGFSFNLE KMDSNSISTL GSSLVELLQS DDPNSMDSTY VRSTAINKLL  420
VWKAEISKTL EVTETEIDSL ENELKSLKSI AVGSSPSASS SLPAEDHLKS SEEGVITHLI  480
PRPAPLQIRS SGDAVVEKLP ISNGDQEEAC ANVKAEDVDS PGTVTSKFVE LLSLAKAVSS  540
SDMLNHAAGN LDHIPLTNKE VQHSVLGSGG EETVPGTCGD CSMLTEGELT APITDTLGSC  600
TDGEVKLHSV ILSSNKELAK GAHDIFNKLL PQDDFNLDSS EGCNAASRQD YALVREKFVM  660
RRQFIKFKER VITLKFRAFQ SLWKEDMHLL SIRKHRAKSQ KKSDLSLRSV HNGYQKHRSS  720
IRSRFSSPAG NLSLVPTAEV VDFTGKLLLD SQIKLYRNNL KMPALILDKK EKIVSRFISN  780
NGLVEDPCVV EKERAMINPW APAEKEIFMD KLATCGKDFK KIASFLDHKT TADCVEFYYK  840
NHKSDSFEKK KKLDCGKQVK SLANATYLRL NKKWNREMNA ASLDILDVAS VMAANADDNM  900
RNRKTCSGRS ILGGLSESKA SWGDDGTDER SSSFDIIGND RETFAADVLA GICGSLSSEA  960
MSSCITSSVD PGEGYREWRS QKVDSVVRRP LTPDVTQHVD DGTCSDESCG EMDPTDWTDE  1020
EKSFFVQAVT SYGRDFSKIS QCVRSRSRDQ CKVFFSKARK CLGLDVIHPG TGNERTFTGD  1080
DANGSGSGSE NVSAREMGSG ICSDKSGSKR DEDLPLSAMK MNNDETDPAE NFTSQTALSR  1140
SEGKNEKEQL NSKRNIGASE SQVSDPCPTQ SRPNLVSDGD STITQSVGET KILPIEERNS  1200
VLAGIETERK DGDEQGTSVA ESVSVCEGNE NDKLLIAESM IGMKPVDEVS SDELGNQTDG  1260
QDEKCNASTS GQSGLDSVVQ DSNSIGNASQ MASDRNSCSG FSLNPDYQRQ VSIELNSKEK  1320
SCVISLSQET PLVSANSMSL DSDVIQCEKN GNEDKISSSL DFQESRDVCH ISVCKDESNE  1380
HVTGLPLLTN AQSSQVLRAY PLQMQVKKEV NGGVMCINSS EVQSLSSSET SNNAPLSQNC  1440
YLQRCSNLNT PCSMTEFPLM SQNIEQAIDG QKSRSQSLSD SEKPSRSGGD VKLFGKILTT  1500
PSLLKADSNY WENEEKEGSN NHKLSNQSNL KFSNLHNSDG NSTLLKFDRK NYLGIENVQM  1560
RSYSYWDGNR LQATFPSVPD SAILLAKYPA AFSNFSAPSS TVEQQSLQSV VNSNELDVNG  1620
VSAYPTRETS NSNGMVDYQV YRSREAAKVQ PFTVDVKQRQ DMFSEVQRRN GIETISSFQH  1680
QGRGMVGINV LGRGGIVVGG ACTTGVSDPV AALKMHFAKT EQQYGGQSSS IIREDESWRG  1740
NGDMGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-14	762	848	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-14	762	848	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023460.1	0.0	uncharacterized protein LOC21396603 isoform X1
TrEMBL	A0A2P5CPT9	0.0	A0A2P5CPT9_TREOI; Octamer-binding transcription factor
STRING	XP_010099638.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-171	MYB family protein