PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026735.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

DBB

Protein Properties

Length: 340aa MW: 37251.1 Da PI: 7.1942

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026735.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.7e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++e++ +C+ ++ lC++C H+ H+ HL.SW.v1.0.G026735.1 4 QCDVCTKNEASVYCTADEAALCDTCDHRVHHAnklaskHQ 43 7**************************9964446666666 PP
2	zf-B_box	25.2	3.3e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++ek++ lfC++++ lC++C +H Ht HL.SW.v1.0.G026735.1 54 QIPLCDICQEKRAFLFCQQDRAILCRECDYPIHATneHT 92 6689****************************9656765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.793	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.30E-5	3	47	No hit	No description
Pfam	PF00643	3.5E-5	4	43	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-7	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-11	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.182	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.4E-7	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.42E-8	56	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MKIQCDVCTK NEASVYCTAD EAALCDTCDH RVHHANKLAS KHQRFSLLHP SSKQIPLCDI 60 CQEKRAFLFC QQDRAILCRE CDYPIHATNE HTQKHNRYLL TGVKLSPTTK LYESPSTNAV 120 SDSISCPKST TQTQSSSVSS VKKSVTSISP PIPNPPNNNN NNSLPKTSST TSTNDEGTGS 180 VTGTSTALTS SISEYLIETL PGWHVEDFLD SSSAAFGFCK NDVGLVSPFW DCDMENNQLG 240 SLSSENTGLW VPQAPAPPMY SSSSNNNNHN HHHQHQHHRP SEILGLKETK EATNTKANAA 300 TKRWADDAFT VPQINLPYSN NNSSNNTNGC SSKRSRPLW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105277.1	1e-121	B-box zinc finger protein 21
TrEMBL	A0A2P5EZP6	1e-135	A0A2P5EZP6_TREOI; B-box-type zinc finger
STRING	XP_010105277.1	1e-121	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-56	salt tolerance homolog2