PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025023.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 718aa    MW: 77021.2 Da    PI: 6.9375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025023.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16463509455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  HL.SW.v1.0.G025023.1 463 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 509
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-17455513No hitNo description
SuperFamilySSF474591.44E-20456520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-20456517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MPLSELYRLA RRRVDTNQDF PPANDVCELI WENGQIATQG QSSRTRKDPT YNSLPSHYLP  60
SYTQKSRDKD VGNGTTSKTG KFGTVDTVLN EIPMSVSSNE VGLSHDDDVM PWLNYPIDGS  120
LQHEYCSDLL PELSGVTVND ITKSNNFVSN DKSSCNLLYR DSNANSVGYG SSLDQRHGSK  180
VPSVVGANVL RPRTGTTLYP SSSSQECQAS FPSFRSRGVD AIADNTSSAA RHSVCGDSAR  240
IPSPGSIPSQ KMQKKDPIPP TNSSIVINFS HFSRPAALVK TNHQNTSTTA DSNVSNMESL  300
PNKDKSSAAN SNSPPKPALM DSTSSLRKEA STHCQIKASG IDLKPSEARP LEEPCAAKDT  360
MAVCPEDASK NDLNFNQIPC ESATRAPPDG EKNTEPVVAS SSVCSGNSME RASDDPTHAL  420
KRKFRDIEDS ECHSEDVDEE SVGVKKTAHP RGSGSKRSRA AEVHNLSERR RRDRINEKMR  480
ALQELIPNCN KVDKASMLDE AIEYLKTLQL QVQIMSMGAG LCMPPMMLPP GMQHMHAPHM  540
AHFSPMGIGM GMGMGMGFGM GMPDINGASS GYPMIQVPPM HAAHYPGPPI PGHSAGMHGM  600
TGPNLQVFGM PGQGLSMPMQ RAPLVSMMGG PFMKSSVGLN ACGVNGSVEN MESARSYTAK  660
DPVQNISASS STNQTSTQCQ ATNEGFKQPA LVQSNVQASD VNGSKVPDSA NRNEVGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020429.10.0transcription factor PIF3
TrEMBLA0A2P5DRB80.0A0A2P5DRB8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010094912.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-78phytochrome interacting factor 3