PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022164.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 361aa    MW: 39499.3 Da    PI: 4.8327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022164.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19145194154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           s y+GVr++k +g+W+AeIrd +     + +r +lg++ t+eeA ka++a r+++e
  HL.SW.v1.0.G022164.1 145 SPYRGVRQRK-WGKWAAEIRDpF-----KgARLWLGTYNTPEEASKAYEAKRLEFE 194
                           68*******9.**********55.....45***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-17145194IPR016177DNA-binding domain
PROSITE profilePS5103220.336146207IPR001471AP2/ERF domain
SMARTSM003801.2E-19146209IPR001471AP2/ERF domain
PfamPF008478.6E-13147195IPR001471AP2/ERF domain
PRINTSPR003671.2E-9147158IPR001471AP2/ERF domain
CDDcd000186.61E-23147193No hitNo description
Gene3DG3DSA:3.30.730.105.1E-22147199IPR001471AP2/ERF domain
PRINTSPR003671.2E-9169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSADSVFDLV VIGAPSKKLC LARLVNFVSM RLRPRRELEH LIFPKMPEPR KQSSKSMRKI  60
RVICSDPYAT DSSSSEDEGF SRKASKKCKR IVREIQVPLF PKPTKTLESE SSVQDSNYGV  120
GGKTLNPKRR VLAKTTSGTK KPSSSPYRGV RQRKWGKWAA EIRDPFKGAR LWLGTYNTPE  180
EASKAYEAKR LEFEAMAATT APTVKFNSSS SSASVSASAS ASAVVSASSE DSESVVSHNS  240
PSSVLELETS VSDSKPDACA DTTGKNPNIS EDETPDLGFM DEVLASFPPF EQDMSFGPEL  300
DTLFLDDIDD LLNGFNNIDD IQIFGVDDKD SSNLPDCDFD DLGKDDISFW MEGALNIPCL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-111442111280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885153.11e-103ethylene-responsive transcription factor ERF119-like
TrEMBLA0A2P5DZ651e-149A0A2P5DZ65_PARAD; AP2/ERF transcription factor
STRINGXP_010103775.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-34ERF family protein