PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

ERF

Protein Properties

Length: 169aa MW: 18700.5 Da PI: 8.9467

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G020540.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	27	78	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps +g +r +lg+f+taeeAa+a+++a+ +++g+ HL.SW.v1.0.G020540.1 27 KYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFDTAEEAARAYDRAAFNFRGH 78 8******.******96543..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.62E-24	27	86	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.7E-32	27	87	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-15	27	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.291	27	85	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-37	27	91	IPR001471	AP2/ERF domain
CDD	cd00018	2.67E-31	27	86	No hit	No description
PRINTS	PR00367	1.1E-11	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-11	51	67	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEDPNDYNSK RSHEQQQQGS KEDPQVKYRG VRRRPWGKFA AEIRDPSRQG ARLWLGTFDT 60 AEEAARAYDR AAFNFRGHLA ILNFPNEYYS RVMGSPPYPP HITFSSTHSA GSSSSSSGPC 120 QGSGSSGAGA GAGMGMSGRR QERQVFEFEY LDDKVLEELL GSEKDKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-31	27	155	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093427.1	3e-69	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	6e-51	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	W9R427	6e-68	W9R427_9ROSA; Ethylene-responsive transcription factor
STRING	XP_010093427.1	1e-68	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	5e-41	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]